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EMBL BioImage Data Analysis

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Timeline of @cmci_

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RT @StifelCenter: A visual programming language for ImageJ that allows to create macros without any programming by just creating a flowchar…
About 1 week, 5 days ago by: Kota Miura (@cmci_)

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@naba_chatterjee @haesleinhuepf I'm afraid not
About 1 week, 6 days ago by: Kota Miura (@cmci_)

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Symposium Programme 2023: BioImage Data Analysis: Tools & Workflows in Life Sciences Deep Learning for Image Data… https://t.co/ZfjtsDdyFK
About 1 week, 6 days ago by: Kota Miura (@cmci_)

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Training School 2023 Introduction to bioimage analysis, tools, and workflows FAIR principles Cloud-hosted image da… https://t.co/FnzmoxI2Eb
About 1 week, 6 days ago by: Kota Miura (@cmci_)

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IN-PERSON #NEUBIAS training school and symposium! Deadline for the Training school on Wednesday... sorry for this b… https://t.co/8rbitWsBka
About 1 week, 6 days ago by: Kota Miura (@cmci_)

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RT @BertrandVernay: Beautiful 3D dataset; One of them is going to find its way to our @RISE_micro "Introduction to image processing and ana…
About 2 weeks, 3 days ago by: Kota Miura (@cmci_)
documents:121019htm

2012 EMBO High-throughput Microscopy Practical Course

Dates: 2012.10.15-20 Place: ATC, EMBL Heidelberg

    1. With Andrea Boni @ Ellenberg Lab
    2. Abstract: The students will learn basics of image analysis of time lapse data. We will first go through preprocessing steps: filtering, noise reduction and background subtraction. We then move on to image thresholding and segmentation techniques, which allow us to objectively define region of interest (ROI) where the temporal dynamics of signal intensity are measured. Automation is an esseitial aspect in highthroughput imaging. In this session, students will be guided to learn how to automate the imaging processing steps that we went through manually. Scripting is necessary for automation. For this reason, a brief introduction to code ImageJ macro will be provided and students will learn to write a short macro that processes raw data and outputs results automatically.
  1. Demo script (written in Jython)
  2. Student ImageJ macro: example
documents/121019htm.txt · Last modified: 2016/05/24 12:46 (external edit)