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Timeline of @cmci_

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RT @KuglerElisabeth: One question I often get is "How do I assess my segmentation?" Together with Andrik Bin Rampun, .@Timchico, and Paul…
About 4 hours, 25 mins ago by: Kota Miura (@cmci_)

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RT @clairebrown514: @cmci_ We use https://t.co/J9y0625zRl . People still need to be convinced and reminded to put the #RRID in the acknowled…
About 5 hours, 25 mins ago by: Kota Miura (@cmci_)

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RT @Coronin: Wonderful historical perspective from Tom Pollard: Landmarks in the discovery of a role for actin in cell locomotion https://t…
About 14 hours, 1 min ago by: Kota Miura (@cmci_)

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RT @IAMichaelNelson: @cmci_ @CCI_liv I recommended to my old core https://t.co/mOai5Zez5b . A "how to use our core facility" protocol and ma…
About 19 hours, 24 mins ago by: Kota Miura (@cmci_)

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RT @cmci_: @CCI_liv It’s an idea. What would you say? There are journals that allows versioning, so it can be updated every time when there…
About 19 hours, 42 mins ago by: Kota Miura (@cmci_)

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@CCI_liv It’s an idea. What would you say? There are journals that allows versioning, so it can be updated every ti… https://t.co/xz3xKR243j
About 19 hours, 52 mins ago by: Kota Miura (@cmci_)
documents:121019htm

2012 EMBO High-throughput Microscopy Practical Course

Dates: 2012.10.15-20 Place: ATC, EMBL Heidelberg

    1. With Andrea Boni @ Ellenberg Lab
    2. Abstract: The students will learn basics of image analysis of time lapse data. We will first go through preprocessing steps: filtering, noise reduction and background subtraction. We then move on to image thresholding and segmentation techniques, which allow us to objectively define region of interest (ROI) where the temporal dynamics of signal intensity are measured. Automation is an esseitial aspect in highthroughput imaging. In this session, students will be guided to learn how to automate the imaging processing steps that we went through manually. Scripting is necessary for automation. For this reason, a brief introduction to code ImageJ macro will be provided and students will learn to write a short macro that processes raw data and outputs results automatically.
  1. Demo script (written in Jython)
  2. Student ImageJ macro: example
documents/121019htm.txt · Last modified: 2016/05/24 12:46 (external edit)