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EMBL BioImage Data Analysis



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RT @kjaMartens: We created a very simple method to get high precision and density in spectrally-resolved single-molecule localization micro…
About 1 day, 14 hours ago by: Kota Miura (@cmci_)

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RT @random_walker: There’s a reproducibility crisis brewing in almost every scientific field that has adopted machine learning. On July 28,…
About 2 days, 3 hours ago by: Kota Miura (@cmci_)

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@AthaleLab @IISERPune @serbonline @DBTIndia @IFCPAR @OfficialSICI @boschindia Congrats Prof. Chait!
About 5 days, 15 hours ago by: Kota Miura (@cmci_)

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RT @albertcardona: Video of my #I2K2022 entry-level scripting tutorial for #ImgLib2 using the @FijiSc Script Editor:
About 1 week ago by: Kota Miura (@cmci_)

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RT @blg_journal: Biological Imaging has two current calls for papers, please share with your networks: Spatial Analysis in Biological Imag…
About 1 week, 1 day ago by: Kota Miura (@cmci_)

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This reference is also interesting. What Is the Region Occupied by a Set of Points?
About 1 week, 1 day ago by: Kota Miura (@cmci_)
Algorithm Document FRAP Fiji ImageJ ImageJ Plugin ImageJ Plugin 3Dviewer Imaris Java Javascript Python R added 201904 Freiburg bias blog dokuwiki fiji google imagej java jpblog libraries matlab neubias news papers python references software webadmin

CMCI weblog

Server moved

The web server hosting this wiki has moved from EMBL to InMotion. The move was rather straight forward, but as is in the subdomain, htaccess file was tweaked around to enable to stay as it is while moving only the wiki to be redirected from to

Anycase, InMotion seems to be fast enough for rendering (even though it's in US).

Nature Physics Sept. 2013 Cover Page

The ImageJ plugin "Temporal-Color Code" was used for the analysis of the contraction of actomyosin gel and now in the cover page of Nature Physics, September 2013 issue. D. L. Taylor's “Solation-Contraction Coupling” hypothesis now on the move.

Thanks to José Alvarado for his kind acknowledgement and a big applause for his successful publication!

To be in R programming course

I do write some scripts in R but not really serious programming. As I am interested in advanced use of R, I will be in the following course organized by Wolfgang Huber.

The course seems to match with my stage, as it explains

This course is designed for users who have experience with writing R scripts, and who now want to advance one step further, into producing more durable and robust software projects and code that is usable by others.

As I always have had a plan to migrate FRAPcalc program from IgorPro to R and also add some more functionalities, this course should be the one I should attend… I thank Wolfgang for his initiative in making this course available. Besides, I am happy to see another EMBL centre being active!

BIAS 2013 wiki page

There will be “EMBL Master course on BioImage Data Analysis” in May, and I am preparing for this course with Christoph Moehl (Bonn) and Sebastien Tosi (Barcelona). For the course we want to be interactive so we now have a wiki for the course:

We abbreviate the course title “BIAS 2013”. Registration deadline is in February, and we will be waiting for many applications!

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Weblog Archive

blogtng/blogtop.txt · Last modified: 2021/01/25 02:26 by kota