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CMCI weblog

Reproducible image handling and analysis

We often hear retraction of papers with fake image data like gel images with hand-drawn bands and cleanups, but in addition to such elementary-level mistakes, there are image analyses used in papers that are scientifically questionable. With Simon, we tried to shed light on this overlooked problem and propose a solution.

NEUBIAS Training School Paper

Details of motivations, the design, and paedagogic concepts of NEUBIAS Bioimage Analysis schools, started in 2017, are now in a manuscript. I wrote the “Bioimage Analyst School” part, and am quite satisfied to have the written record of our struggle and achievements, that I did together with the bioimage analysis genius Jean-Yves Tinevez (The Pasteur Institute, Paris).

F1000R NEUBIAS Gateway: Highlights from the 2016-2020 NEUBIAS training schools for Bioimage Analysts: a success story and key asset for analysts and life scientists

Bleach Correction Plugin Paper

The paper describing the Bleach Correction Plugin (for ImageJ) is now published.

Please cite this paper if you are using this plugin!

Bioimage Data Analysis Workflow (2019) Springer We now have a new book "Bioimage Data Analysis Workflow"published from Springer, topics of which are centered around bioimage analysis workflows. The book is open access - thanks to the support from COST Action.

Server moved

The web server hosting this wiki has moved from EMBL to InMotion. The move was rather straight forward, but as is in the subdomain, htaccess file was tweaked around to enable to stay as it is while moving only the wiki to be redirected from to

Anycase, InMotion seems to be fast enough for rendering (even though it's in US).

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Weblog Archive

blogtng/blogtop.txt · Last modified: 2021/01/25 02:26 by kota

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