mainpages:courses:202009witten
Workshop: Basics of Bioimage Analysis using ImageJ
Instructor
Kota Miura (Ph.D., Bioimage Analyst)
email: kotapub@gmail.com
URL: http://wiki.cmci.info
Organizer
Wing-Kee Lee, B.Sc., Ph.D.
Assistant Professor
Institute for Physiology, Pathophysiology & Toxicology
Department of Medicine, Faculty of Health
University of Witten/Herdecke
Place and Time
Place: FEZ (großer Saal), Alfred-Herrhausen-Straße 50, 58455 Witten
Date & Time: September 24th (10:00-18:00) & 25th (9:00-17:00), 2020
Preparation
Slides will be provided to you after the workshop.
Please install Fiji and plugins in your machine. Instructions are written in the page below.
Schedule
Day 1: 24 September (Thu), 2020
| Time | Topic |
|---|---|
| 10:00 - 11:00 | Introduction |
| 11:00 - 11:30 | COFFEE BREAK |
| 11:30 - 12:30 | From Images to Numbers |
| 12:30 - 13:30 | LUNCH BREAK |
| 13:30 - 15:30 | From Numbers to Images |
| Multi-Dimensional Data | |
| 15:30 - 16:00 | COFFEE BREAK |
| 16:00 - 18:00 | Region of Interest and Segmentation |
| Pre- & Post-processing for a better segmentation | |
| How filters work, Usage of Filters |
Day 2: 25 September (Fri), 2020
| Time | Topic |
|---|---|
| 09:00 - 10:00 | Measurements: Counting and Locating Dots |
| 10:00 - 10:30 | COFFEE BREAK |
| 10:30 - 12:30 | Measurements: Lengths |
| Measurements: Area | |
| Measurements: Volume | |
| 12:30 - 13:30 | LUNCH BREAK |
| 13:30 - 15:00 | Batch Processing |
| Measuring Intensity Changes | |
| 15:00 - 15:30 | COFFEE BREAK |
| 15:30 - 16:30 | Measuring Position Changes: Tracking Manually |
| Measuring Position Changes: Tracking Automatically | |
| 16:30 - 17:00 | Answering to questions posted before the workshop |
mainpages/courses/202009witten.txt · Last modified: 2020/09/21 11:54 by kota