A B C D E F G H I K L M N O P Q R S T U V W X Y Z

C

center() - Method in class ij3d.image3d.FHTImage3D

Description of the Method

centerCrop(int, int, int) - Method in class ij3d.image3d.RealImage3D

Description of the Method

centerFeatures(TabUtil[]) - Method in class ij3d.align.Align2D

Description of the Method

centerx - Variable in class ij3d.image3d.Image3D

Description of the Field

centery - Variable in class ij3d.image3d.Image3D

Description of the Field

centerz - Variable in class ij3d.image3d.Image3D

Description of the Field

changeImage(int, ImageProcessor) - Method in class ij3d.align.Align2D

Description of the Method

changeStack(ImageStack) - Method in class ij3d.align.Align2D

changes the ImageStack on which alignment is performed

chol() - Method in class ij3d.Jama.Matrix

Cholesky Decomposition

CholeskyDecomposition - Class in ij3d.Jama

Cholesky Decomposition.

CholeskyDecomposition(Matrix) - Constructor for class ij3d.Jama.CholeskyDecomposition

Cholesky algorithm for symmetric and positive definite matrix.

Chrono - Class in ij3d.utils

Class that defines a chronometer

Chrono() - Constructor for class ij3d.utils.Chrono

Constructor for the Chrono object

Chrono(int) - Constructor for class ij3d.utils.Chrono

Constructor for the Chrono object

clone() - Method in class ij3d.Jama.Matrix

Clone the Matrix object.

closestBorder(double, double, double) - Method in class ij3d.geom.Objects3DPopulation

closestCenter(double, double, double) - Method in class ij3d.geom.Objects3DPopulation

ColorImage3D - Class in ij3d.image3d

IntImage3D implemente la classe Image3D pour une utilisation avec des images contenant de valeurs entieres

ColorImage3D() - Constructor for class ij3d.image3d.ColorImage3D

constructeur d'un volume vide attention rien dedans maximum de couleur

ColorImage3D(int) - Constructor for class ij3d.image3d.ColorImage3D

constructeur d'un volume vide attention rien dedans nombre de couleur fourni

ColorImage3D(int, int, int) - Constructor for class ij3d.image3d.ColorImage3D

constructeur d'un volume vide (noir)

ColorImage3D(int, int, int, int) - Constructor for class ij3d.image3d.ColorImage3D

constructeur d'un volume vide (noir)

ColorPoint3D - Class in ij3d.geom

Description of the Class

ColorPoint3D(float, float, float, float, float, float) - Constructor for class ij3d.geom.ColorPoint3D

Constructor for the Point3D object

computeBounding() - Method in class ij3d.geom.Object3D

Compute the bounding box of the object

computeCenter() - Method in class ij3d.geom.Object3D

Compute the barycenter and the volume

computeContours() - Method in class ij3d.geom.Object3D

Compute the contours of the object rad=0.5

computeContours(IntImage3D) - Method in class ij3d.geom.Object3D

computeMassCenter(Image3D) - Method in class ij3d.geom.Object3D

compute mass center with an image

computeMinMax() - Method in class ij3d.image3d.Image3D

Description of the Method

computeMoments() - Method in class ij3d.geom.Object3D

Computation of the dispersion tensor with units value

computeMomentsInertia() - Method in class ij3d.geom.Object3D

Computation of the inertia tensor with units value

computeRotation(double, double) - Method in class ij3d.align.Align2D

compute the rotation for the images. the rotations will be computed between 2 consecutive images in Fourier Space

computeRotation(boolean, double, double) - Method in class ij3d.align.Align2D

compute the rotation for the images. the rotations will be computed between 2 consecutive images

computeRotation2Images(ImageProcessor, ImageProcessor, double, double) - Static method in class ij3d.align.Align2D

compute the rotation between 2 images in space domain
the second image is rotated in the allowed range and the rotation obtaining the best correlation coefficient is returned

computeRotation2ImagesFHT(ImageProcessor, ImageProcessor, double, double) - Static method in class ij3d.align.Align2D

compute the rotation between 2 images using the Fourier Transform.

computeRotationOld(double, double) - Method in class ij3d.align.Align2D

Description of the Method

concat(TabUtil) - Method in class ij3d.utils.TabUtil

concat an array to the end

cond() - Method in class ij3d.Jama.Matrix

Matrix condition (2 norm)

cond() - Method in class ij3d.Jama.SingularValueDecomposition

Two norm condition number

constructWithCopy(double[][]) - Static method in class ij3d.Jama.Matrix

Construct a matrix from a copy of a 2-D array.

contient(int) - Method in class ij3d.utils.TabUtil

Le tableau contient-il cette valeur

contientQue(int) - Method in class ij3d.utils.TabUtil

test if array has only a particular value

contours - Variable in class ij3d.geom.Object3D

Contours pixels

convolve(float[], float) - Method in class ij3d.utils.TabUtil

Convolution with a kernel

copy() - Method in class ij3d.Jama.Matrix

Make a deep copy of a matrix

CopyTomocoms() - Method in class ij3d.ext.Imod

Description of the Method

correlation(ImageProcessor, ImageProcessor, double, double) - Static method in class ij3d.align.Align2D

compute the correlation between 2 images

couleur - Variable in class ij3d.image3d.ColorImage3D

Description of the Field

createCube(Vector3D, double, double, double, float) - Method in class ij3d.geom.ObjectCreator3D

Description of the Method

createCube(int, int, int, double, double, double, float) - Method in class ij3d.geom.ObjectCreator3D

Creation d'une brique

createCubeUnit(Vector3D, double, double, double, float) - Method in class ij3d.geom.ObjectCreator3D

Description of the Method

createCubeUnit(double, double, double, double, double, double, float) - Method in class ij3d.geom.ObjectCreator3D

Description of the Method

createEllipsoid(Vector3D, double, double, double, float) - Method in class ij3d.geom.ObjectCreator3D

Description of the Method

createEllipsoid(int, int, int, double, double, double, float, boolean) - Method in class ij3d.geom.ObjectCreator3D

Creation d'une ellipsoide

createEllipsoidAxes(int, int, int, double, double, double, float, Matrix, boolean) - Method in class ij3d.geom.ObjectCreator3D

Creation d'une ellipsoide

createEllipsoidAxes(int, int, int, double, double, double, float, Vector3D, boolean) - Method in class ij3d.geom.ObjectCreator3D

createEllipsoidUnit(double, double, double, double, double, double, float, boolean) - Method in class ij3d.geom.ObjectCreator3D

Description of the Method

createEllipsoidUnit(Vector3D, double, double, double, float) - Method in class ij3d.geom.ObjectCreator3D

Description of the Method

createKernelEllipsoid(float, float, float) - Method in class ij3d.image3d.Image3D

createLine(int, int, int, int, int, int, float, int) - Method in class ij3d.geom.ObjectCreator3D

Create a 3D line

createLine(Vector3D, Vector3D, float, int) - Method in class ij3d.geom.ObjectCreator3D

Description of the Method

createLine(Point3D, Point3D, float, int) - Method in class ij3d.geom.ObjectCreator3D

createLineUnit(Vector3D, Vector3D, float, int) - Method in class ij3d.geom.ObjectCreator3D

Description of the Method

createLocalMaximaImage(int, int, int, boolean) - Method in class ij3d.image3d.Image3D

Création d'une image des maxima locaux dans un voisinage donne

createLocalMaximaImage(int, int, int, boolean) - Method in class ij3d.image3d.IntImage3D

Création d'une image des maxima locaux dans un voisinage donne

createLocalMaximaImage(int, int, int, int, boolean) - Method in class ij3d.image3d.IntImage3D

Création d'une image des maxima locaux dans un voisiange donne

createLocalMaximaImage(int, int, int, boolean) - Method in class ij3d.image3d.RealImage3D

Création d'une image des maxima locaux dans un voisiange donne

createPixel(int, int, int, int) - Method in class ij3d.geom.ObjectCreator3D

Description of the Method

createRoi(int) - Method in class ij3d.geom.Object3D

Constructor for the createRoi object

CreateXf(double[], double[], double[], String) - Method in class ij3d.ext.Imod

Constructor for the CreateXf object

CreateXf(double, double[][], int, String) - Method in class ij3d.ext.Imod

Create a Xf file for a given angle of rotation and shifts

CreateXf(double, int, String) - Method in class ij3d.ext.Imod

Description of the Method

crop(int, int, int, int, int, int) - Method in class ij3d.image3d.Image3D

Description of the Method

crop(int, int, int, int, int, int) - Method in class ij3d.image3d.RealImage3D

Description of the Method

crossCorrelation(ImageProcessor, ImageProcessor) - Static method in class ij3d.align.Align2D

computes the crosscorrelation between 2 images using FFT

crossCorrelation(ImageProcessor, ImageProcessor, int, int) - Static method in class ij3d.align.Align2D

compute the crosscorrelation between 2 images with a maximum translation of (maxX,maxY)

crossCorrelation(ImageStack, ImageStack) - Static method in class ij3d.image3d.FHTImage3D

Cross Correlation 3D on ImageStack

crossCorrelation(Image3D, Image3D) - Static method in class ij3d.image3d.FHTImage3D

Cross Correlation 3D on Image3D

crossProduct(Vector3D) - Method in class ij3d.geom.Vector3D

the cross product between two vectors

cx - Variable in class ij3d.geom.Object3D

Center of mass

cy - Variable in class ij3d.geom.Object3D

cz - Variable in class ij3d.geom.Object3D