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RT @Boutroslab: CytoData 2019 Symposium and Hackathon @DKFZ on image profiling, single cell analysis and deep learning. Oct 27-30, 2019 i…
About 8 hours, 54 mins ago by: Kota Miura (@cmci_)

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RT @HenriquesLab: Off the press today. Our paper with @eakcohen and Ober labs - Statistic characterisation of #PhotoSwitching behaviour in…
About 8 hours, 55 mins ago by: Kota Miura (@cmci_)

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RT @biorxivpreprint: DeepImageJ: A user-friendly plugin to run deep learning models in ImageJ https://t.co/qxhTq4aa9B #bioRxiv
About 8 hours, 55 mins ago by: Kota Miura (@cmci_)

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RT @haesleinhuepf: Introducing to #BioImageAnalysis with #python and #scikitimage in just 90 minutes: @uschmidt83 in full swing 🤩 https:…
About 20 hours, 55 mins ago by: Kota Miura (@cmci_)

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RT @ahklemm: Jan Eglinger @jan_eglinger is showing how to mix #imageJ and #python using pyimagej in #Jupyter. #TS13 @NEUBIAS_COST https://t…
About 20 hours, 56 mins ago by: Kota Miura (@cmci_)

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RT @haesleinhuepf: Spontaneous #applause 👏 and tons of questions 🙋‍♂️ when @uschmidt83 shows results of dense cell segmentation using #WeA…
About 20 hours, 56 mins ago by: Kota Miura (@cmci_)
blogtng:2010-11-03:r_and_imagej

R and ImageJ

R is a statistical computing package, and ImageJ is image processing and analysis software (actually, R could do image processing and ImageJ could also do statistics, but not usually used and tools are limited). Ideal work is then to somehow combine these two.

Such attempts has not been rare. Several attempts has been made. Project such as RImageJ is one of such.

http://romainfrancois.blog.free.fr/index.php?category/R-package/RImageJ

Recently, an integrated interface is available.

Bio7
http://129.70.40.49/modelling/?page_id=75

It seems that this project is mostly oriented towards ecology analysis, but the basic concept is to ease passing data between R and ImageJ. There many instructions on example usage of the software.

Java - R JRI - Java/R Interface http://www.rforge.net/JRI/

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blogtng/2010-11-03/r_and_imagej.txt · Last modified: 2016/05/24 05:46 (external edit)