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RT @haesleinhuepf: Upgrading #ImageJ #autocomplete: Suggestions for user defined functions and variables - because people asked for it. Fr…
About 16 hours, 45 mins ago by: Kota Miura (@cmci_)

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RT @biorxivpreprint: Myosoft: an automated muscle histology analysis tool using machine learning algorithm utilizing FIJI/ImageJ software.…
About 16 hours, 45 mins ago by: Kota Miura (@cmci_)

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RT @ltuckerkellogg: Several great Computation Biology postdoc jobs have been posted at https://t.co/ahPafWjyVP in machine learning, dynamic…
About 2 days, 21 hours ago by: Kota Miura (@cmci_)

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RT @JCellBiol: Cross-linker–mediated regulation of #actin network organization controls tissue #morphogenesis, say Krueger et al @embl http…
About 4 days, 23 hours ago by: Kota Miura (@cmci_)

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RT @Dev_journal: "QuBiT: a quantitative tool for analyzing epithelial tubes reveals unexpected patterns of organization in the Drosophila t…
About 4 days, 23 hours ago by: Kota Miura (@cmci_)

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RT @ijmacros: Check out our paper in the Journal of Neuroscience Methods - 'A Versatile Macro-Based Neurohistological Image Analysis Suite…
About 4 days, 23 hours ago by: Kota Miura (@cmci_)
blogtng:2010-11-03:r_and_imagej

R and ImageJ

R is a statistical computing package, and ImageJ is image processing and analysis software (actually, R could do image processing and ImageJ could also do statistics, but not usually used and tools are limited). Ideal work is then to somehow combine these two.

Such attempts has not been rare. Several attempts has been made. Project such as RImageJ is one of such.

http://romainfrancois.blog.free.fr/index.php?category/R-package/RImageJ

Recently, an integrated interface is available.

Bio7
http://129.70.40.49/modelling/?page_id=75

It seems that this project is mostly oriented towards ecology analysis, but the basic concept is to ease passing data between R and ImageJ. There many instructions on example usage of the software.

Java - R JRI - Java/R Interface http://www.rforge.net/JRI/

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blogtng/2010-11-03/r_and_imagej.txt · Last modified: 2016/05/24 05:46 (external edit)