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EMBL BioImage Data Analysis

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an open position for a bioimage analyst, Antwerp https://t.co/KInzDwy4bd
About 12 hours, 49 mins ago by: Kota Miura (@cmci_)

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RT @napari_imaging: Thanks to all our contributors! If you're interested in learning more about how to use napari then join our upcoming w…
About 5 days, 15 hours ago by: Kota Miura (@cmci_)

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RT @oozguc: Due to the circumstances, we are postponing the meeting to June 12; hopefully, a time we can all go back to scientific and inte…
About 6 days, 12 hours ago by: Kota Miura (@cmci_)

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RT @jytinevez: We finished listing and formatting the Q&A we had during the #TrackMate session of the @NEUBIAS_COST #NEUBIAS_Academy even…
About 6 days, 19 hours ago by: Kota Miura (@cmci_)

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RT @EntraCod: @olivier_debora @jytinevez @NEUBIAS_COST Or in other words, we are doing this for a very specific case rather than generic on…
About 6 days, 19 hours ago by: Kota Miura (@cmci_)

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RT @BoSoxBioBeth: Available now on Youtube at the link below. Thanks @NEUBIAS_COST for having me, it was a ton of fun to talk about @CellP
About 6 days, 19 hours ago by: Kota Miura (@cmci_)
blogtng:2011-04-07:imagesurfer

ImageSurfer

Tried a new multichannel visualization tool: ImageSurfer. http://imagesurfer.cs.unc.edu/help/users-guide.htm

I tried a 5D time series, which you could download using ImageJ File > Open Sample. Here are some impressions. I only tried with tiff-series and there was z-scale problem. Maybe this does not happen with other formats (leica or zeiss format).

  • limited to win32, no mac.
  • Importing tip:
    • For a image series with t-z-c ordered, select Timeseries - Slices - Color
  • setting for z-scaling is unknown. Isosurface rendering appears flat, ignoring scale setting of Tiff image.

Comments



50 +10 = 
blogtng/2011-04-07/imagesurfer.txt · Last modified: 2016/05/24 05:46 (external edit)