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EMBL BioImage Data Analysis

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RT @Datascience__: Dynamic allocation of computational resources for deep learning-enabled cellular image analysis with Kubernetes https://โ€ฆ
About 23 hours, 1 min ago by: Kota Miura (@cmci_)

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RT @mariana_deniz: Many thanks to the @NEUBIAS_COST instructors and organizers for an exciting and stimulating course on image analysis ๐Ÿ˜๐Ÿ˜โ€ฆ
About 1 day, 3 hours ago by: Kota Miura (@cmci_)

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RT @johntigue: 2016 tutorial: Tracing Neurons using FIJI (ImageJ) https://t.co/v4XCeZYjv1 https://t.co/khyN76ct7N
About 3 days, 2 hours ago by: Kota Miura (@cmci_)

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RT @JenCWaters: Our image analysis core has a paid short-term (10 months) machine learning research opportunity available! https://t.co/2ZZ โ€ฆ
About 3 days, 16 hours ago by: Kota Miura (@cmci_)

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@ahklemm @NEUBIAS_COST ๐Ÿถ
About 3 days, 16 hours ago by: Kota Miura (@cmci_)

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RT @laure_plantard: Taggers at work #Neubias https://t.co/vnxjfiaVse
About 3 days, 17 hours ago by: Kota Miura (@cmci_)
blogtng:2011-04-07:imagesurfer

ImageSurfer

Tried a new multichannel visualization tool: ImageSurfer. http://imagesurfer.cs.unc.edu/help/users-guide.htm

I tried a 5D time series, which you could download using ImageJ File > Open Sample. Here are some impressions. I only tried with tiff-series and there was z-scale problem. Maybe this does not happen with other formats (leica or zeiss format).

  • limited to win32, no mac.
  • Importing tip:
    • For a image series with t-z-c ordered, select Timeseries - Slices - Color
  • setting for z-scaling is unknown. Isosurface rendering appears flat, ignoring scale setting of Tiff image.

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185โ€…+10โ€€=โ€„
blogtng/2011-04-07/imagesurfer.txt ยท Last modified: 2016/05/24 05:46 (external edit)