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EMBL BioImage Data Analysis

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Timeline of @cmci_

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@joachimgoedhart @embojournal @SimonFlyvbjerg Thanks a lot! How about at some point, create a demo pipeline with s… https://t.co/5bKSodPo8a
About 1 hour, 11 mins ago by: Kota Miura (@cmci_)

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RT @haesleinhuepf: Invited to @GuidoJuckeland's lecture about "Highly Parallel Programming of GPUs" @tudresden_de I presented my fav use ca…
About 1 hour, 48 mins ago by: Kota Miura (@cmci_)

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RT @kD3AN: Have I confessed my love for CLIJ? Oh yeah, I have…. And pyclesperanto-assistant is off to an even more amazing start. Interac…
About 2 hours, 21 mins ago by: Kota Miura (@cmci_)

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@MarionLouveaux">MarionLouveaux @NEUBIAS_COST @ilastik_team @jytinevez @CALM_STP @romainGuiet Thanks @MarionLouveaux">MarionLouveaux , excellent moderation.
About 6 hours ago by: Kota Miura (@cmci_)

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@jmutterer @bioformats From the view of developers: 99:1 From the view of users: 50:50 (maybe, hypothetical) Bioim… https://t.co/DMIDYmX033
About 6 hours, 1 min ago by: Kota Miura (@cmci_)

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excellent... https://t.co/gAM6gBz249
About 8 hours, 22 mins ago by: Kota Miura (@cmci_)
blogtng:2011-04-07:imagesurfer

ImageSurfer

Tried a new multichannel visualization tool: ImageSurfer. http://imagesurfer.cs.unc.edu/help/users-guide.htm

I tried a 5D time series, which you could download using ImageJ File > Open Sample. Here are some impressions. I only tried with tiff-series and there was z-scale problem. Maybe this does not happen with other formats (leica or zeiss format).

  • limited to win32, no mac.
  • Importing tip:
    • For a image series with t-z-c ordered, select Timeseries - Slices - Color
  • setting for z-scaling is unknown. Isosurface rendering appears flat, ignoring scale setting of Tiff image.
blogtng/2011-04-07/imagesurfer.txt · Last modified: 2016/05/24 12:46 (external edit)