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EMBL BioImage Data Analysis

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RT @christlet: After imaging on a LEGO light-sheet with a LEGO pump, you can visualize the data in a LEGO viewer #LEGOallthethings https://…
About 3 hours, 16 mins ago by: Kota Miura (@cmci_)

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RT @jnuneziglesias: STARmap is amazing! But: Groundbreaking paper ✅ Open access ❌ Uses Ilastik ✅ Cites Ilastik ❌ Uses UMAP ✅ Cites UMAP ❌…
About 6 hours, 19 mins ago by: Kota Miura (@cmci_)

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RT @dwaithe: @sossick @BioImagingUK @NEUBIAS_COST @RoyalMicroSoc We did discuss this topic at the last #IAFIGRMS meeting but focused on cos…
About 2 days, 17 hours ago by: Kota Miura (@cmci_)

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RT @HenriquesLab: Coming back to Portugal in a couple of weeks to teach at my original research institute @IGCiencia. We'll be giving the #…
About 3 days, 1 hour ago by: Kota Miura (@cmci_)

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RT @bxv_cell: CDeep3M - Plug-and-Play cloud based deep learning for image segmentation of light, electron and X-ray microscopy https://t.co
About 3 days, 1 hour ago by: Kota Miura (@cmci_)

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RT @robustgar: New post: Small n correlations + p values = disaster https://t.co/KBgRHGCvLg https://t.co/mBe2oRb3Tk
About 3 days, 1 hour ago by: Kota Miura (@cmci_)
blogtng:2011-06-17:server_imagej_launcher

Server ImageJ Launcher

For easy access to use EMBL cluster for calculation using ImageJ, I tested using Jsch, a pure SSH2 implementation in Java (http://www.jcraft.com/jsch).

I made a ImageJ launcher that runs server-side ImageJ on local desktop (see GitHub repository ServerIJ). X should be ready for hosting the GUI. For further development, interface will be more boring as only some fields to input name of shell script and some options (path name to image files, macro or scripts) will be what you will see.

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70 +13 = ?
blogtng/2011-06-17/server_imagej_launcher.txt · Last modified: 2016/05/24 05:46 (external edit)