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documents:101124locibioformats_bftoolstip

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Using LOCI Bio-Format Command line tools

For converting .lif files to separate tif files:

if LIF file consists of stack series, and to separate them as each tiff stack:

bfconvert laminedapi23012.lif testS%s.tif

All stacks will be extracted as tif stacks with the above command.
To extract only one of the stacks out of .lif file, then specify the series number:

bfconvert -series s laminedapi23012.lif testS%s.tif

if LIF file consists of stack series, each stack has multiple channels and to separate them as each tiff stack with separated channel:

bfconvert laminedapi23012.lif testS%s_C%c.tif
documents/101124locibioformats_bftoolstip.1290603000.txt.gz · Last modified: 2016/05/24 12:46 (external edit)

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