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EMBL BioImage Data Analysis



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Timeline of @cmci_

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Miyo Terao Morita showing analysis of gravitropism using centrifuge microscope they newly developed. I only know…
About 27 mins, 55 secs ago by: Kota Miura (@cmci_)

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@KeikoUTorii ... which then became the cover page of Development cell. convincing.
About 1 hour, 25 mins ago by: Kota Miura (@cmci_)

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@KeikoUTorii model-based hypothesis lead to experiment results with single guard cell development or multiple >2 gu…
About 1 hour, 32 mins ago by: Kota Miura (@cmci_)

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now, @KeikoUTorii on stomata development - how very specific cell fate decisions are made, with proper spacing bet…
About 1 hour, 49 mins ago by: Kota Miura (@cmci_)

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@YvonJaillais talk on nanoclustering of ROP6, great analyses using various approaches to assess protein mobility…
About 2 hours, 5 mins ago by: Kota Miura (@cmci_)

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RT @haesleinhuepf: I need to add this one, because I believe in the power of beautiful data. Same optics, just earlier stage in development…
About 13 hours, 37 mins ago by: Kota Miura (@cmci_)

Java - Matlab Interface

Call Matlab From Java

    • matlabcontrol is a Java API that allows for controlling and interacting with both local and remote MATLAB sessions. Local sessions are those in which the Java program has been launched from inside MATLAB. Remote sessions are those in which the Java program has been launched independently and then the Java program launches MATLAB.
    • a bit more aboutjmi.jar natively included in the native Matlab package.
  • The Official Method for generating Java package that include m file function as class method is to use MATLAB Builder JA.
    • Whether this class is usable as library is not tested. From what it looks like in the flash tutorial in the web page above, source should be modified from println out put to something else.

Call Java From Matlab

Calling external Java classes from within Matlab seems to be pretty easy.

  • general description of how-to: Calling Java from MatLab
  • A plugin MIJ developed by Daniel Sage does good job on import/export Images between Matlab and ImageJ
  • Fiji provides an m file “Miji.m” that bridges call from Matlab.
    • quote: “Daniel Sage's MIJ library to use Fiji/ImageJ from within Matlab is included with Fiji now. Just add to the search path and call Miji.”

Calling Java and Matlab from Netbeans

documents/110524java_matlab.txt · Last modified: 2016/05/24 05:46 (external edit)