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 clij moved to a new house https://t.co/XJ0YBhE2jE About 2 hours, 50 mins ago by: Kota Miura (@cmci_) RT @regagino: My postdoc work with Sarah Woolner's lab @FBMH_UoM is out @CellReports! Decoupling the Roles of Cell Shape and Mechanical St… About 18 hours, 12 mins ago by: Kota Miura (@cmci_) RT @sbarolo: #WomeninSTEM get a lot of “Reply Guys” who repeat the same unhelpful comments. @shrewshrew and I (a woman & a man in science)… About 18 hours, 13 mins ago by: Kota Miura (@cmci_) RT @cohenlaboratory: Female with microscope? Add yourself to the list! https://t.co/gN3ThsklUj About 1 day, 17 hours ago by: Kota Miura (@cmci_) RT @Dr_Fluo: The mesmerizing real-time shuttling of protoplasm within the plasmodial syncitium of the #Physarum #SlimeMold. Scarily dynamic… About 1 day, 21 hours ago by: Kota Miura (@cmci_) I did the same on Sunday hearing the news. Many of the monologues of the people were a bit remote to me when I was… https://t.co/5dZWBQPMv5 About 1 day, 21 hours ago by: Kota Miura (@cmci_)
documents:120618fijijythonineclipse

# Using Fiji Jython interpreter in Eclipse

Fiji has jython interpreter that allows you to do processing and analysis interactively via console. In case of using it from command line, following command launches the interactive interpreter as it is described in the Fiji website.

./ImageJ --jython


When you are developing a Fiji plugin using Eclipse, you might want to use this interactive functionality from within Eclipse. This could be done by configuring “External tools” as below. If you want to use other scripting language, you could replace the argument to –js, –jruby and so on.