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RT @biomicugm: Topics: Biostatistics, computational evolutionary biology, computational genomics and proteomics, graph models, image analys…
About 1 day, 15 hours ago by: Kota Miura (@cmci_)

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RT @JustinMCrocker: We are looking for an interdisciplinary EIPOD postdoc to join our group @EMBL! Potential projects with @Eileen_Furlong,…
About 1 day, 15 hours ago by: Kota Miura (@cmci_)

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RT @BioImagingUK: This maybe of interest to the @NEUBIAS_COST @openmicroscopy communities #imageAnalysis #imagingScientist https://t.co/I5
About 1 day, 15 hours ago by: Kota Miura (@cmci_)

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RT @BioImagingUK: Software developer position on large image data analysis - working closely with the lab of @bayraktar_lab @sangerinstitut…
About 6 days, 1 hour ago by: Kota Miura (@cmci_)

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RT @AssafZaritsky: Modeling the interplay of lamellipodial motion and the intercellular actomyosin cable during epithelial wound healing h…
About 6 days, 22 hours ago by: Kota Miura (@cmci_)

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RT @jytinevez: @florianjug says be careful when using #CARE for intensity based quantification; CARE restoration is like a non linear trans…
About 1 week, 1 day ago by: Kota Miura (@cmci_)
documents:120618fijijythonineclipse

Using Fiji Jython interpreter in Eclipse

Fiji has jython interpreter that allows you to do processing and analysis interactively via console. In case of using it from command line, following command launches the interactive interpreter as it is described in the Fiji website.

./ImageJ --jython

When you are developing a Fiji plugin using Eclipse, you might want to use this interactive functionality from within Eclipse. This could be done by configuring “External tools” as below. If you want to use other scripting language, you could replace the argument to –js, –jruby and so on.

documents/120618fijijythonineclipse.txt · Last modified: 2016/05/24 05:46 (external edit)