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RT @CornellBiotech: Join us for the Fiji (ImageJ) Summer Workshop Aug 10-12 https://t.co/hRVTW6JJyL
About 3 days, 11 hours ago by: Kota Miura (@cmci_)

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RT @christlet: Extending the classic full-width at half-maximum (FWHM) method for estimating image resolution on sub-resolutive structures…
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RT @CiminiLab: I've made a Twitter Community for Bioimage Analysis- feel free to join and share widely! I'll fully admit this is an experim…
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RT @kjaMartens: We created a very simple method to get high precision and density in spectrally-resolved single-molecule localization micro…
About 1 month ago by: Kota Miura (@cmci_)

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RT @random_walker: There’s a reproducibility crisis brewing in almost every scientific field that has adopted machine learning. On July 28,…
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@AthaleLab @IISERPune @serbonline @DBTIndia @IFCPAR @OfficialSICI @boschindia Congrats Prof. Chait!
About 1 month, 1 week ago by: Kota Miura (@cmci_)
documents:120618fijijythonineclipse

Using Fiji Jython interpreter in Eclipse

Fiji has jython interpreter that allows you to do processing and analysis interactively via console. In case of using it from command line, following command launches the interactive interpreter as it is described in the Fiji website.

./ImageJ --jython

When you are developing a Fiji plugin using Eclipse, you might want to use this interactive functionality from within Eclipse. This could be done by configuring “External tools” as below. If you want to use other scripting language, you could replace the argument to –js, –jruby and so on.

documents/120618fijijythonineclipse.txt · Last modified: 2016/05/24 12:46 (external edit)