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RT @martinjones78: After a covid-enforced 1 year hiatus, undergrad #SandwichStudent placements resume in 2022 @TheCrick, including this one…
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Portugueses, aqui está! https://t.co/vXaxWRhC03
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Fiji / ImageJ course @ Lisbon https://t.co/Vqi31iWvxu
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RT @iii_imaging: interested in #SuperResolution #ElectronMicroscopy and Image Analysis in #Toxoplasma? we have all this in this great work…
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RT @dukebiochem: Don't forget about tomorrow's research seminar with Dr. Alberto Bartesaghi, when he will speak about "High-resolution cryo…
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RT @PhelpsLab_UF: @UFBME is hiring in the AI space. Image analysis folks working on AI or DL like #StarDist and #ZeroCostDL4mic, can you sh…
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documents:120618fijijythonineclipse

Using Fiji Jython interpreter in Eclipse

Fiji has jython interpreter that allows you to do processing and analysis interactively via console. In case of using it from command line, following command launches the interactive interpreter as it is described in the Fiji website.

./ImageJ --jython

When you are developing a Fiji plugin using Eclipse, you might want to use this interactive functionality from within Eclipse. This could be done by configuring “External tools” as below. If you want to use other scripting language, you could replace the argument to –js, –jruby and so on.

documents/120618fijijythonineclipse.txt · Last modified: 2016/05/24 12:46 (external edit)