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RT @jytinevez: LimeSeg on bioRXiv: LimeSeg: A coarsed-grained lipid membrane simulation for 3D image segmentation https://t.co/jECl7deOVG
About 9 hours, 14 mins ago by: Kota Miura (@cmci_)

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Impressive and swift moderation @helenajambor !
About 2 days, 14 hours ago by: Kota Miura (@cmci_)

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RT @LuisDVerde: Now available as a #ggplot2 geom thanks to @naupakaz https://t.co/zOaMWvzd8k https://t.co/AXYBCeGyw6
About 2 days, 14 hours ago by: Kota Miura (@cmci_)

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RT @helenajambor: awesome, within 2 days .@naupakaz made a code publicly available for anyone wanting to make the half-and-half-plot FYI @…
About 2 days, 14 hours ago by: Kota Miura (@cmci_)

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RT @dgaboriau: Thread on data visualisation: ggplots, boxplots and violin plots https://t.co/QZE7xQtaa3
About 2 days, 19 hours ago by: Kota Miura (@cmci_)

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RT @christlet: SUSHI from Valentin Nāgerl lab allows super-resolution microscopy of neuronal morphology by STED imaging of extracellular sp…
About 2 days, 23 hours ago by: Kota Miura (@cmci_)
documents:120618fijijythonineclipse

Using Fiji Jython interpreter in Eclipse

Fiji has jython interpreter that allows you to do processing and analysis interactively via console. In case of using it from command line, following command launches the interactive interpreter as it is described in the Fiji website.

./ImageJ --jython

When you are developing a Fiji plugin using Eclipse, you might want to use this interactive functionality from within Eclipse. This could be done by configuring “External tools” as below. If you want to use other scripting language, you could replace the argument to –js, –jruby and so on.

documents/120618fijijythonineclipse.txt · Last modified: 2016/05/24 05:46 (external edit)