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EMBL BioImage Data Analysis

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Timeline of @cmci_

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RT @SimonFlyvbjerg: Image analysis job opening in Wonderful Copenhagen https://t.co/fkjOmdgPB5
About 10 hours, 59 mins ago by: Kota Miura (@cmci_)

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RT @JekelyLab: Interested in connectomics? Join us in stunning Exeter! Postdoc opening to work on Platynereis serial EM data @UoE_Jobs @Uni…
About 11 hours ago by: Kota Miura (@cmci_)

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I like this kind of analysis - protein and organelle distributions
About 11 hours, 3 mins ago by: Kota Miura (@cmci_)

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Measuring radial intensity profile using custom IJ macro. Fig4b. https://t.co/cW0piWvTqq https://t.co/jz76Qv2Brp
About 11 hours, 4 mins ago by: Kota Miura (@cmci_)

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RT @SfPRocur: One hashtag to follow for this kind of #sciart is #cellfie - different kinds of cells usually captured in a microscope. Look…
About 22 hours, 34 mins ago by: Kota Miura (@cmci_)

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RT @herrsaalfeld: Oh---look what just came out: https://t.co/vXrMIAx5we @funkstille @srinituraga @cremi_challenge
About 23 hours, 53 mins ago by: Kota Miura (@cmci_)
documents:120618fijijythonineclipse

Using Fiji Jython interpreter in Eclipse

Fiji has jython interpreter that allows you to do processing and analysis interactively via console. In case of using it from command line, following command launches the interactive interpreter as it is described in the Fiji website.

./ImageJ --jython

When you are developing a Fiji plugin using Eclipse, you might want to use this interactive functionality from within Eclipse. This could be done by configuring “External tools” as below. If you want to use other scripting language, you could replace the argument to –js, –jruby and so on.

documents/120618fijijythonineclipse.txt · Last modified: 2016/05/24 05:46 (external edit)