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EMBL BioImage Data Analysis

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RT @COST_INDEPTH: Superb online training event provided by the @NEUBIAS_COST Academy, beginning on April 14th with a course on ImageJ/Fiji…
About 1 hour, 8 mins ago by: Kota Miura (@cmci_)

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RT @NEUBIAS_COST: Attention to the Bioimaging community: The NEUBIAS Academy starts with online training events https://t.co/OHpCYsNYwy h…
About 20 hours, 36 mins ago by: Kota Miura (@cmci_)

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RT @PavelTomancak: Whoa!
About 3 days, 3 hours ago by: Kota Miura (@cmci_)

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wow... https://t.co/cxgvLCIXeB
About 5 days, 1 hour ago by: Kota Miura (@cmci_)

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@e_petsalaki @GallegoLab @marko_kaksonen @Biosdfp @taraskalab @AndrewPlested @giraldezT @PeyingFong @ScottKFergusonhttps://t.co/ePwUQfWOIg
About 1 week, 3 days ago by: Kota Miura (@cmci_)

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.. I think that was a wrong link, here we go: COvid19 RESPirator OpeN SourcE https://t.co/NRILmhK0V6 #COVID19
About 1 week, 3 days ago by: Kota Miura (@cmci_)
documents:120618fijijythonineclipse

Using Fiji Jython interpreter in Eclipse

Fiji has jython interpreter that allows you to do processing and analysis interactively via console. In case of using it from command line, following command launches the interactive interpreter as it is described in the Fiji website.

./ImageJ --jython

When you are developing a Fiji plugin using Eclipse, you might want to use this interactive functionality from within Eclipse. This could be done by configuring “External tools” as below. If you want to use other scripting language, you could replace the argument to –js, –jruby and so on.

documents/120618fijijythonineclipse.txt · Last modified: 2016/05/24 05:46 (external edit)