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EMBL BioImage Data Analysis

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Timeline of @cmci_

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The field for bioimage analyst expanding. British museum! https://t.co/KClNvxP948
About 2 days, 5 hours ago by: Kota Miura (@cmci_)

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RT @dgaboriau: Panel session: should I aim to become a bioimage analyst? With Robert Hasse @haesleinhuepf , Kota Miura @cmci_ and Arianne B…
About 3 days, 20 hours ago by: Kota Miura (@cmci_)

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RT @martinjones78: Shoutout by @cmci_ for @clathrin's book https://t.co/x6d2OmfdxR as a great resource, here at #CBIAS2022 in the panel ses…
About 3 days, 20 hours ago by: Kota Miura (@cmci_)

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RT @alex_paynedwyer: The one and only Kota Miura @cmci_ calling out all those dodgy contrast-mismatched figures #ethics in classic humorou…
About 4 days, 4 hours ago by: Kota Miura (@cmci_)

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RT @RekadZeinab: Kicking the last session of #CBIAS2022 with the great master @cmci_ on the challenges of doing image analysis at the inter…
About 4 days, 4 hours ago by: Kota Miura (@cmci_)

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RT @MaKaefer: Fear not: there is something that can be done! Abide by the guidelines or report everything that has been done - whether it i…
About 4 days, 4 hours ago by: Kota Miura (@cmci_)
documents:120618fijijythonineclipse

Using Fiji Jython interpreter in Eclipse

Fiji has jython interpreter that allows you to do processing and analysis interactively via console. In case of using it from command line, following command launches the interactive interpreter as it is described in the Fiji website.

./ImageJ --jython

When you are developing a Fiji plugin using Eclipse, you might want to use this interactive functionality from within Eclipse. This could be done by configuring “External tools” as below. If you want to use other scripting language, you could replace the argument to –js, –jruby and so on.

documents/120618fijijythonineclipse.txt · Last modified: 2016/05/24 12:46 (external edit)