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RT @ArkThul: Finally out !! A little chapter : Structure and Fluorescence Intensity Measurements in Biofilms In the book: Computer Optimize…
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RT @BioImagingUK: @UniofOxford is recruiting a Informatics Scientist/Developer duties will include developing analysis methodologies ba…
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documents:120618fijijythonineclipse

Using Fiji Jython interpreter in Eclipse

Fiji has jython interpreter that allows you to do processing and analysis interactively via console. In case of using it from command line, following command launches the interactive interpreter as it is described in the Fiji website.

./ImageJ --jython

When you are developing a Fiji plugin using Eclipse, you might want to use this interactive functionality from within Eclipse. This could be done by configuring “External tools” as below. If you want to use other scripting language, you could replace the argument to –js, –jruby and so on.

documents/120618fijijythonineclipse.txt · Last modified: 2016/05/24 05:46 (external edit)