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EMBL BioImage Data Analysis

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RT @dgaboriau: #BioImageAnalysis Training Schools by @NEUBIAS_COST in Bordeaux Highly recommended if you want world-class teaching ! #NEU…
About 3 days, 6 hours ago by: Kota Miura (@cmci_)

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RT @NEUBIAS_COST: BIAFLOWS: A collaborative framework to benchmark bioimage analysis workflows https://t.co/I23P1BaNUd
About 3 days, 6 hours ago by: Kota Miura (@cmci_)

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RT @SimonFlyvbjerg: Nice collection of papers from 2019 -- Focus on Deep Learning in Microscopy: https://t.co/CfUyLdEiDw #BioImageAnalysi…
About 3 days, 9 hours ago by: Kota Miura (@cmci_)

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RT @mariana_deniz: Here is our @preLights highlight on BIAFLOWS, an exciting tool for sharing, deploying, and comparing bioimage analysis w…
About 6 days ago by: Kota Miura (@cmci_)

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RT @NEUBIAS_COST: NEUBIAS Training Schools TS14 & TS15 – Bordeaux, France, Feb 29 - March 3, 2020 | Applications Now Open - https://t.co/hX
About 1 week ago by: Kota Miura (@cmci_)

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RT @jan_eglinger: Should #TrackMate change its default #colormap ? @FijiSc/#ImageJ users, please contribute your opinions: https://t.co/r5q
About 1 week ago by: Kota Miura (@cmci_)
documents:120618fijijythonineclipse

Using Fiji Jython interpreter in Eclipse

Fiji has jython interpreter that allows you to do processing and analysis interactively via console. In case of using it from command line, following command launches the interactive interpreter as it is described in the Fiji website.

./ImageJ --jython

When you are developing a Fiji plugin using Eclipse, you might want to use this interactive functionality from within Eclipse. This could be done by configuring “External tools” as below. If you want to use other scripting language, you could replace the argument to –js, –jruby and so on.

documents/120618fijijythonineclipse.txt · Last modified: 2016/05/24 05:46 (external edit)