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EMBL BioImage Data Analysis

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RT @dgaboriau: #BioImageAnalysis Training Schools by @NEUBIAS_COST in Bordeaux Highly recommended if you want world-class teaching ! #NEU…
About 3 days, 7 hours ago by: Kota Miura (@cmci_)

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RT @NEUBIAS_COST: BIAFLOWS: A collaborative framework to benchmark bioimage analysis workflows https://t.co/I23P1BaNUd
About 3 days, 7 hours ago by: Kota Miura (@cmci_)

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RT @SimonFlyvbjerg: Nice collection of papers from 2019 -- Focus on Deep Learning in Microscopy: https://t.co/CfUyLdEiDw #BioImageAnalysi…
About 3 days, 10 hours ago by: Kota Miura (@cmci_)

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RT @mariana_deniz: Here is our @preLights highlight on BIAFLOWS, an exciting tool for sharing, deploying, and comparing bioimage analysis w…
About 6 days, 1 hour ago by: Kota Miura (@cmci_)

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RT @NEUBIAS_COST: NEUBIAS Training Schools TS14 & TS15 – Bordeaux, France, Feb 29 - March 3, 2020 | Applications Now Open - https://t.co/hX
About 1 week ago by: Kota Miura (@cmci_)

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RT @jan_eglinger: Should #TrackMate change its default #colormap ? @FijiSc/#ImageJ users, please contribute your opinions: https://t.co/r5q
About 1 week ago by: Kota Miura (@cmci_)
documents:121019htm

2012 EMBO High-throughput Microscopy Practical Course

Dates: 2012.10.15-20 Place: ATC, EMBL Heidelberg

    1. With Andrea Boni @ Ellenberg Lab
    2. Abstract: The students will learn basics of image analysis of time lapse data. We will first go through preprocessing steps: filtering, noise reduction and background subtraction. We then move on to image thresholding and segmentation techniques, which allow us to objectively define region of interest (ROI) where the temporal dynamics of signal intensity are measured. Automation is an esseitial aspect in highthroughput imaging. In this session, students will be guided to learn how to automate the imaging processing steps that we went through manually. Scripting is necessary for automation. For this reason, a brief introduction to code ImageJ macro will be provided and students will learn to write a short macro that processes raw data and outputs results automatically.
  1. Demo script (written in Jython)
  2. Student ImageJ macro: example
documents/121019htm.txt · Last modified: 2016/05/24 05:46 (external edit)