User Tools

Site Tools


Sidebar

Top
Seminar
Courses -2016
Courses 2018-
Textbooks
Documents
Downloads (-2016)
Downloads (2016-)
Weblog
RSS aggregates
Discussions
Archives


EMBL BioImage Data Analysis

EuBIAS

NEUBIAS

—- Contact
CMCI Alumni
ALMF
EMBL Heidelberg
EMBL Intranet


Popularity Ranking


Timeline of @cmci_

cmci_ avatar

thank you, thank you, and thank you! https://t.co/RUJ9XQiLQI
About 20 hours, 28 mins ago by: Kota Miura (@cmci_)

cmci_ avatar

Impressive https://t.co/mjCITcRC3Z
About 1 day, 17 hours ago by: Kota Miura (@cmci_)

cmci_ avatar

RT @MarionLouveaux: 🎉 The #BioimageAnalysis Twitter bot 🤖 @Talk_BioImg is one year old 🎂!!! 🎉 I created it with @StatnMap to gather the #Bi…
About 1 day, 21 hours ago by: Kota Miura (@cmci_)

cmci_ avatar

RT @dgaboriau: Fishy fishy!
About 1 day, 21 hours ago by: Kota Miura (@cmci_)

cmci_ avatar

RT @Po_Strale: New type of microswimmer described by Aoun et al (Theodoly Lab @univamu) in @BiophysJ . Interesting study with #micropattern…
About 1 day, 21 hours ago by: Kota Miura (@cmci_)

cmci_ avatar

RT @IgnacioArganda: Would you like to get a PhD in one of best labs in the world with one of the nicest PIs ever? Apply! https://t.co/YLRFC
About 2 days, 3 hours ago by: Kota Miura (@cmci_)
documents:121019htm

2012 EMBO High-throughput Microscopy Practical Course

Dates: 2012.10.15-20 Place: ATC, EMBL Heidelberg

    1. With Andrea Boni @ Ellenberg Lab
    2. Abstract: The students will learn basics of image analysis of time lapse data. We will first go through preprocessing steps: filtering, noise reduction and background subtraction. We then move on to image thresholding and segmentation techniques, which allow us to objectively define region of interest (ROI) where the temporal dynamics of signal intensity are measured. Automation is an esseitial aspect in highthroughput imaging. In this session, students will be guided to learn how to automate the imaging processing steps that we went through manually. Scripting is necessary for automation. For this reason, a brief introduction to code ImageJ macro will be provided and students will learn to write a short macro that processes raw data and outputs results automatically.
  1. Demo script (written in Jython)
  2. Student ImageJ macro: example
documents/121019htm.txt · Last modified: 2016/05/24 12:46 (external edit)