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EMBL BioImage Data Analysis

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Timeline of @cmci_

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Anna getting ready for her talk @NEUBIAS_COST workshop starting in 3 min. https://t.co/Dl9ZI0NKDs
About 7 hours, 19 mins ago by: Kota Miura (@cmci_)

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RT @MIAP_Freiburg: @MIAP_Freiburg @UniFreiburg will host another basic Fiji @FijiSc/#ImageJ workshop on November 14th-15th 2018 with Kota M…
About 7 hours, 20 mins ago by: Kota Miura (@cmci_)

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RT @haesleinhuepf: Let's measure with @laure_plantard and #ImageJ at #NEUBIAS #TS8 🤘 https://t.co/oVpyDWP3HT
About 1 day, 1 hour ago by: Kota Miura (@cmci_)

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RT @haesleinhuepf: Tracking cells on steroids: @jytinevez introducing #Mamut just next door #NEUBIAS #TS9 https://t.co/cKYq55i2JU
About 1 day, 1 hour ago by: Kota Miura (@cmci_)

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RT @haesleinhuepf: Anna Klemm from @scilifelab lifting us to the next level: tracking objects #NEUBIAS #TS8 https://t.co/FSkyLXilAO
About 1 day, 1 hour ago by: Kota Miura (@cmci_)

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RT @dn_mason: Check out our latest @biorxivpreprint (/w @Rosalierrr @ViolaineSee, @raphavisses & Rachel Bearon)! A workflow for imaging, tr…
About 1 day, 4 hours ago by: Kota Miura (@cmci_)
documents:121019htm

2012 EMBO High-throughput Microscopy Practical Course

Dates: 2012.10.15-20 Place: ATC, EMBL Heidelberg

    1. With Andrea Boni @ Ellenberg Lab
    2. Abstract: The students will learn basics of image analysis of time lapse data. We will first go through preprocessing steps: filtering, noise reduction and background subtraction. We then move on to image thresholding and segmentation techniques, which allow us to objectively define region of interest (ROI) where the temporal dynamics of signal intensity are measured. Automation is an esseitial aspect in highthroughput imaging. In this session, students will be guided to learn how to automate the imaging processing steps that we went through manually. Scripting is necessary for automation. For this reason, a brief introduction to code ImageJ macro will be provided and students will learn to write a short macro that processes raw data and outputs results automatically.
  1. Demo script (written in Jython)
  2. Student ImageJ macro: example
documents/121019htm.txt · Last modified: 2016/05/24 05:46 (external edit)