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EMBL BioImage Data Analysis

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Timeline of @cmci_

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RT @BoSoxBioBeth: 2 days left to submit an abstract proposal! We want all your best ideas on image analysis!
About 8 hours, 12 mins ago by: Kota Miura (@cmci_)

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RT @ManuelTHERY: Here we are. The combination of biochemically controled differentiation of iPS cells with microprinting to direct cell sel…
About 8 hours, 13 mins ago by: Kota Miura (@cmci_)

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RT @haesleinhuepf: "Do you also spend a substantial amount of your time waiting for automated image analysis to finish? [...] And, then, th…
About 19 hours, 39 mins ago by: Kota Miura (@cmci_)

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RT @ALM_i3S: Do you want to extract quantitative data from images and automate this process by learning ImageJ Macro Language? Apply to t…
About 1 day, 14 hours ago by: Kota Miura (@cmci_)

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RT @martinjones78: Very interesting #BioImageAnalysis PhD position! https://t.co/85QLBKiANx
About 1 day, 14 hours ago by: Kota Miura (@cmci_)

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RT @jobRxiv: #ScienceJobs: Image Analyst / Python programmer Francis Crick Institute (@TheCrick), London, UK https://t.co/T7cDhv9PX0 #P…
About 1 day, 14 hours ago by: Kota Miura (@cmci_)
documents:121019htm

2012 EMBO High-throughput Microscopy Practical Course

Dates: 2012.10.15-20 Place: ATC, EMBL Heidelberg

    1. With Andrea Boni @ Ellenberg Lab
    2. Abstract: The students will learn basics of image analysis of time lapse data. We will first go through preprocessing steps: filtering, noise reduction and background subtraction. We then move on to image thresholding and segmentation techniques, which allow us to objectively define region of interest (ROI) where the temporal dynamics of signal intensity are measured. Automation is an esseitial aspect in highthroughput imaging. In this session, students will be guided to learn how to automate the imaging processing steps that we went through manually. Scripting is necessary for automation. For this reason, a brief introduction to code ImageJ macro will be provided and students will learn to write a short macro that processes raw data and outputs results automatically.
  1. Demo script (written in Jython)
  2. Student ImageJ macro: example
documents/121019htm.txt · Last modified: 2016/05/24 05:46 (external edit)