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EMBL BioImage Data Analysis

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RT @haesleinhuepf: Thanks @gomez_mariscal for contributing to our #NEUBIAS satellite meeting! Looking forward to seed #DeepImageJ in action…
About 2 days, 1 hour ago by: Kota Miura (@cmci_)

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RT @EMBLEvents: #BioimageAnalysis is a keystone of biological research. Due to the complexity of data, it's likely that #ImageAnalysis algo…
About 2 days, 4 hours ago by: Kota Miura (@cmci_)

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RT @gomez_mariscal: Excited about introducing #deepImageJ during the #NEUBIASSatelliteMeeting https://t.co/6jR3iDvK8s @NEUBIAS_COST @COM
About 2 days, 15 hours ago by: Kota Miura (@cmci_)

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@fab_cordelieres @NEUBIAS_COST @BIC_Bordeaux :)
About 2 days, 22 hours ago by: Kota Miura (@cmci_)

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@haesleinhuepf @TalleyJLambert @Ulrike_Boehm "The intensity of this image sequence..."
About 3 days, 1 hour ago by: Kota Miura (@cmci_)

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RT @focalplane_jcs: Hi all, my name is Christos @KyprianouChr and I am the Community Manager of the FocalPlane site, launching this summer.…
About 6 days, 23 hours ago by: Kota Miura (@cmci_)
documents:121019htm

2012 EMBO High-throughput Microscopy Practical Course

Dates: 2012.10.15-20 Place: ATC, EMBL Heidelberg

    1. With Andrea Boni @ Ellenberg Lab
    2. Abstract: The students will learn basics of image analysis of time lapse data. We will first go through preprocessing steps: filtering, noise reduction and background subtraction. We then move on to image thresholding and segmentation techniques, which allow us to objectively define region of interest (ROI) where the temporal dynamics of signal intensity are measured. Automation is an esseitial aspect in highthroughput imaging. In this session, students will be guided to learn how to automate the imaging processing steps that we went through manually. Scripting is necessary for automation. For this reason, a brief introduction to code ImageJ macro will be provided and students will learn to write a short macro that processes raw data and outputs results automatically.
  1. Demo script (written in Jython)
  2. Student ImageJ macro: example
documents/121019htm.txt · Last modified: 2016/05/24 05:46 (external edit)