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EMBL BioImage Data Analysis

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Timeline of @cmci_

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RT @SimonFlyvbjerg: Image analysis job opening in Wonderful Copenhagen https://t.co/fkjOmdgPB5
About 10 hours, 58 mins ago by: Kota Miura (@cmci_)

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RT @JekelyLab: Interested in connectomics? Join us in stunning Exeter! Postdoc opening to work on Platynereis serial EM data @UoE_Jobs @Uni…
About 10 hours, 59 mins ago by: Kota Miura (@cmci_)

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I like this kind of analysis - protein and organelle distributions
About 11 hours, 1 min ago by: Kota Miura (@cmci_)

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Measuring radial intensity profile using custom IJ macro. Fig4b. https://t.co/cW0piWvTqq https://t.co/jz76Qv2Brp
About 11 hours, 2 mins ago by: Kota Miura (@cmci_)

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RT @SfPRocur: One hashtag to follow for this kind of #sciart is #cellfie - different kinds of cells usually captured in a microscope. Look…
About 22 hours, 33 mins ago by: Kota Miura (@cmci_)

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RT @herrsaalfeld: Oh---look what just came out: https://t.co/vXrMIAx5we @funkstille @srinituraga @cremi_challenge
About 23 hours, 52 mins ago by: Kota Miura (@cmci_)
documents:121019htm

2012 EMBO High-throughput Microscopy Practical Course

Dates: 2012.10.15-20 Place: ATC, EMBL Heidelberg

    1. With Andrea Boni @ Ellenberg Lab
    2. Abstract: The students will learn basics of image analysis of time lapse data. We will first go through preprocessing steps: filtering, noise reduction and background subtraction. We then move on to image thresholding and segmentation techniques, which allow us to objectively define region of interest (ROI) where the temporal dynamics of signal intensity are measured. Automation is an esseitial aspect in highthroughput imaging. In this session, students will be guided to learn how to automate the imaging processing steps that we went through manually. Scripting is necessary for automation. For this reason, a brief introduction to code ImageJ macro will be provided and students will learn to write a short macro that processes raw data and outputs results automatically.
  1. Demo script (written in Jython)
  2. Student ImageJ macro: example
documents/121019htm.txt · Last modified: 2016/05/24 05:46 (external edit)