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clij moved to a new house https://t.co/XJ0YBhE2jE
About 3 hours, 44 mins ago by: Kota Miura (@cmci_)

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RT @regagino: My postdoc work with Sarah Woolner's lab @FBMH_UoM is out @CellReports! Decoupling the Roles of Cell Shape and Mechanical St…
About 19 hours, 5 mins ago by: Kota Miura (@cmci_)

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RT @sbarolo: #WomeninSTEM get a lot of “Reply Guys” who repeat the same unhelpful comments. @shrewshrew and I (a woman & a man in science)…
About 19 hours, 7 mins ago by: Kota Miura (@cmci_)

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RT @cohenlaboratory: Female with microscope? Add yourself to the list! https://t.co/gN3ThsklUj
About 1 day, 18 hours ago by: Kota Miura (@cmci_)

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RT @Dr_Fluo: The mesmerizing real-time shuttling of protoplasm within the plasmodial syncitium of the #Physarum #SlimeMold. Scarily dynamic…
About 1 day, 22 hours ago by: Kota Miura (@cmci_)

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I did the same on Sunday hearing the news. Many of the monologues of the people were a bit remote to me when I was… https://t.co/5dZWBQPMv5
About 1 day, 22 hours ago by: Kota Miura (@cmci_)
documents:121019htm

2012 EMBO High-throughput Microscopy Practical Course

Dates: 2012.10.15-20 Place: ATC, EMBL Heidelberg

    1. With Andrea Boni @ Ellenberg Lab
    2. Abstract: The students will learn basics of image analysis of time lapse data. We will first go through preprocessing steps: filtering, noise reduction and background subtraction. We then move on to image thresholding and segmentation techniques, which allow us to objectively define region of interest (ROI) where the temporal dynamics of signal intensity are measured. Automation is an esseitial aspect in highthroughput imaging. In this session, students will be guided to learn how to automate the imaging processing steps that we went through manually. Scripting is necessary for automation. For this reason, a brief introduction to code ImageJ macro will be provided and students will learn to write a short macro that processes raw data and outputs results automatically.
  1. Demo script (written in Jython)
  2. Student ImageJ macro: example
documents/121019htm.txt · Last modified: 2016/05/24 05:46 (external edit)