User Tools

Site Tools


Sidebar

Top
Seminar
Courses
Textbooks
Documents
Downloads (-2016)
Downloads (2016-)
Weblog
RSS aggregates
Discussions
Archives


EMBL BioImage Data Analysis

EuBIAS

NEUBIAS

—- Contact
CMCI Alumni
ALMF
EMBL Heidelberg
EMBL Intranet


Popularity Ranking


Timeline of @cmci_

cmci_ avatar

RT @jytinevez: LimeSeg on bioRXiv: LimeSeg: A coarsed-grained lipid membrane simulation for 3D image segmentation https://t.co/jECl7deOVG
About 9 hours ago by: Kota Miura (@cmci_)

cmci_ avatar

Impressive and swift moderation @helenajambor !
About 2 days, 13 hours ago by: Kota Miura (@cmci_)

cmci_ avatar

RT @LuisDVerde: Now available as a #ggplot2 geom thanks to @naupakaz https://t.co/zOaMWvzd8k https://t.co/AXYBCeGyw6
About 2 days, 14 hours ago by: Kota Miura (@cmci_)

cmci_ avatar

RT @helenajambor: awesome, within 2 days .@naupakaz made a code publicly available for anyone wanting to make the half-and-half-plot FYI @…
About 2 days, 14 hours ago by: Kota Miura (@cmci_)

cmci_ avatar

RT @dgaboriau: Thread on data visualisation: ggplots, boxplots and violin plots https://t.co/QZE7xQtaa3
About 2 days, 19 hours ago by: Kota Miura (@cmci_)

cmci_ avatar

RT @christlet: SUSHI from Valentin Nāgerl lab allows super-resolution microscopy of neuronal morphology by STED imaging of extracellular sp…
About 2 days, 22 hours ago by: Kota Miura (@cmci_)
documents:20140715ilastikws

iLastik Mini Workshop

Title: Teach your computer to do image analysis for you

Date

Tuesday, 15/07/2014

Schedule

  • 9:00 - 10:00: Talk/demonstration of ilastik 1.0 workflows
  • 10:00 - 10.30: Coffee break
  • 10.30 - 12:00: Practical session – Get ilastik run on your own data

Instructors

ilastik team

  • Stuart Berg
  • Burcin Erocal
  • Carsten Haubold
  • Anna Kreshuk
  • Martin Schiegg
  • Chong Zhang

Organizers

  • Volker Hilsenstein
  • Christian Tischer
  • Kota Miura

Abstract: Driven by an array of new technologies (including high-throughput and high-content approaches in screening, sequencing and imaging), the life sciences are becoming increasingly quantitative. The demand for analysis of complex data sets has boosted the developments and advances of dedicated software tools to process and analyze such data quantitatively using computers.

For this, the ilastik team is organizing a demo session which aims at introducing some insights to their open source software tool ilastik in tackling biological questions. ilastik is an interactive tool using machine learning algorithms which is easy to use and freely available on http://www.ilastik.org/sfn. It is recommended to download and install the software on your own laptop in advance and bring the laptop (64bit!) to the workshop together with your own example data (file sizes < 100 MB). The practical session is a good opportunity to see what the segmentation algorithms, counting, or tracking algorithms in ilastik can achieve on your own data, with few clicks only.

Registration

documents/20140715ilastikws.txt · Last modified: 2016/05/24 05:46 (external edit)