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EMBL BioImage Data Analysis



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EMBL Heidelberg
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Timeline of @cmci_

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RT @MeaganPhelan: “Altogether these data help explain why many serological assays for #SARSCoV2 produce false positives and should be taken…
About 40 mins, 36 secs ago by: Kota Miura (@cmci_)

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RT @will_j_moore: If you want an ImageJ plugin for Figures, with flexible layouts and fast alignment, try
About 48 mins, 46 secs ago by: Kota Miura (@cmci_)

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RT @focalplane_jcs: There's still time to sign up for the journal club tomorrow at 5pm (UK time)! Join us as @WilsonAdams_ goes through 'Vi…
About 1 hour, 26 mins ago by: Kota Miura (@cmci_)

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RT @Co_Biologists: Last few days remaining to submit your image into the @focalplane_jcs Image Competition. Deadline is 1pm on Friday 2 Oct…
About 1 hour, 27 mins ago by: Kota Miura (@cmci_)

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RT @the_Node: New on The Node: From Image to Insight – Morphogenesis Meets Data Science Jonas Hartmann and Darren Gilmour provide a primer…
About 1 hour, 28 mins ago by: Kota Miura (@cmci_)

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I will vote for Erick as the "The Director of the NEUBIAS happy hour"
About 1 hour, 29 mins ago by: Kota Miura (@cmci_)

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Kota Miura
Centre for Molecular and Cellular Imaging (CMCI)
EMBL Heidelberg
miura at embl dot de
Tel: +49 6221 387 404


  • 12-05-30 First verison
  • 12-09-21 Added course module plugins, references

recent changes


Released under the GNU General Public License v2.


ImageJ ver 1.34j or higher (ImageJ, upgrade page), or Fiji.

Installation & Updating

There are two ways.

  1. Use Fiji Updater.
  2. Manually download the plugin and install.

Fiji Updater

Follow the instruction in Fiji Wiki to add “CMCI-EMBL” to your updater. The advantage of using this method over manual download & installation is that the plugin is automatically updated when I upgrade it in future.

Manual Download

Download the plugin EMBL_sampleimages-1.0.x.jar from the latest release in the following page:

and place it in the plugin folder of ImageJ (or Fiji).


This plugin adds a new menu “EMBL” in the menu bar

downloads/sampleimageloader.txt · Last modified: 2016/06/01 08:56 by kota