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Time Series Color Coder
Color coding traces by time.
Author
Kota Miura
Centre for Molecular and Cellualr Imaging (CMCI)
EMBL Heidelberg
miura at embl dot de
Tel: +49 6221 387 404
History
- 08-02-12??? created ver1 K_TimeRGBcolorcode.ijm
- 08-02-13??? stack slice range option added. ??? ???
- time color code scale option added.? ???
- future probable addiition: none-linear assigning of gray intensity to color intensity??? ???
- → but this is same as doing contrast enhancement before processing.
Source
Released under the GNU General Public License.
Requires
ImageJ ver 1.34j or higher (ImageJ, upgrade page).
Installation
Download K_TimeRGBcolorcode.ijm to a place where you can access easily. Install the macro by [Plugins→Macros→Install…].
Description
Temporal changes in position of object will be color coded.
For example, sequece such as
will be converted to color coded stack
Max intensity projection of this sequence yields
Coding table will also be created (check the option).
Work Flow
1. Open a stack (8 bit or 16 bit)
2. Run the macro
3. In the dialog choose one of the LUT for time coding.?Select frame range (default is full). Check if you want to have color scale bar.