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EMBL BioImage Data Analysis

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an open position for a bioimage analyst, Antwerp https://t.co/KInzDwy4bd
About 14 hours, 19 mins ago by: Kota Miura (@cmci_)

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RT @napari_imaging: Thanks to all our contributors! If you're interested in learning more about how to use napari then join our upcoming w…
About 5 days, 17 hours ago by: Kota Miura (@cmci_)

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RT @oozguc: Due to the circumstances, we are postponing the meeting to June 12; hopefully, a time we can all go back to scientific and inte…
About 6 days, 14 hours ago by: Kota Miura (@cmci_)

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RT @jytinevez: We finished listing and formatting the Q&A we had during the #TrackMate session of the @NEUBIAS_COST #NEUBIAS_Academy even…
About 6 days, 21 hours ago by: Kota Miura (@cmci_)

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RT @EntraCod: @olivier_debora @jytinevez @NEUBIAS_COST Or in other words, we are doing this for a very specific case rather than generic on…
About 6 days, 21 hours ago by: Kota Miura (@cmci_)

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RT @BoSoxBioBeth: Available now on Youtube at the link below. Thanks @NEUBIAS_COST for having me, it was a ton of fun to talk about @CellP
About 6 days, 21 hours ago by: Kota Miura (@cmci_)
mainpages:courses:202001stuttgart

Bioimage Analysis Basics using ImageJ @Stuttgart

Date

Jan 21th (T), 22th (W) & 23th (T) 2020

Introduction

This three-day introductory workshop teaches the basics of digital image processing and analysis for biological / biomedical studies. The goal of the workshop is that participants acquire basic knowledge and technique for measurements using image data.

Participation is most fruitful for learners who are conducting biological or medical research and are already using or are planning to use (light) microscopy for quantification purposes.

Participants should bring their own laptops. Please contact me in case this is not possible for you. Instructions on how to properly install and configure ImageJ will be provided before the workshop.

Location

The Bin-BW ImageJ workshop will take place at (TBA).

A detailed agenda is listed in the table below.

Workshop trainer

Kota Miura (kotapub@gmail.com), Freelance Bioimage Analyst & Vice Chair, NEUBAIS (The Network of European Bioimage Analysts)

Learning Resources

Preparation before coming

1. Please download Fiji from the following URL.

2. Start Fiji, then in the menu [Help > Update…]

  • A window “ImageJ updater” opens. In that window, click the button “Manage update sites” at the bottom-left.
  • Another window called “Manage Update Sites” opens. From the list of update sites, tick “CMCI-EMBL”.
  • Close the “Manage update sites” window by clicking the button “close”.
  • In the “ImageJ updater” window, click the button “apply changes” at the bottom. It takes a while to download additional files. When completed, you will be asked to restart Fiji - so quit Fiji, and relaunch Fiji. Check the menu and there should be a new menu item “EMBL”.
  • More plugins to be installed will be announced later (using the update sites function, like explained above).

Schedule

The schedule below may change depending on the progress, but the order of topics will mostly be kept as it is listed.

mainpages/courses/202001stuttgart.txt · Last modified: 2019/12/09 05:32 by kota