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EMBL BioImage Data Analysis

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RT @mycroscopy: 📢📢📢It's time for our next Neubias Academy @ home webinar: CellPose Date: 25.1.2022 15:30-17:00 CET Registration and more in…
About 1 day, 7 hours ago by: Kota Miura (@cmci_)

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RT @RogerDAntuono: The video of "Introduction to ImJoy: AI-powered image analysis on the web" - [NEUBIAS Academy@Home] Webinar held by @wei
About 1 day, 13 hours ago by: Kota Miura (@cmci_)

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RT @haesleinhuepf: Jeey! 🥳 Big thanks to Anna @APoetsch for this joint #BioImageAnalysis / #BioStatistics / #Python / #MachineLearning teac…
About 1 day, 13 hours ago by: Kota Miura (@cmci_)

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RT @i3S_UPorto: General introduction to ImageJ/Fiji & methods to extract quantitative data. Design of typical workflows to automate image a…
About 3 days, 1 hour ago by: Kota Miura (@cmci_)

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@vdneuro download the unix version, unpack .tar file and then copy the jar file to the plugin folder. I believe it… https://t.co/bdHcQRRv3M
About 3 days, 1 hour ago by: Kota Miura (@cmci_)

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Beautiful work https://t.co/GQ2bbBSXkM
About 4 days, 6 hours ago by: Kota Miura (@cmci_)
mainpages:courses:202001stuttgart

Bioimage Analysis Basics using ImageJ @Stuttgart

Date

Jan 21th (T), 22th (W) & 23th (T) 2020

Introduction

This three-day introductory workshop teaches the basics of digital image processing and analysis for biological / biomedical studies. The goal of the workshop is that participants acquire basic knowledge and technique for measurements using image data.

Participation is most fruitful for learners who are conducting biological or medical research and are already using or are planning to use (light) microscopy for quantification purposes.

Participants should bring their own laptops. Please contact me in case this is not possible for you. Instructions on how to properly install and configure ImageJ will be provided before the workshop.

Location

The Bin-BW ImageJ workshop will take place at (TBA).

A detailed agenda is listed in the table below.

Workshop trainer

Kota Miura (kotapub@gmail.com), Freelance Bioimage Analyst & Vice Chair, NEUBAIS (The Network of European Bioimage Analysts)

Learning Resources

Preparation before coming

1. Please download Fiji from the following URL.

2. Start Fiji, then in the menu [Help > Update…]

  • A window “ImageJ updater” opens. In that window, click the button “Manage update sites” at the bottom-left.
  • Another window called “Manage Update Sites” opens. From the list of update sites, tick “CMCI-EMBL”.
  • Close the “Manage update sites” window by clicking the button “close”.
  • In the “ImageJ updater” window, click the button “apply changes” at the bottom. It takes a while to download additional files. When completed, you will be asked to restart Fiji - so quit Fiji, and relaunch Fiji. Check the menu and there should be a new menu item “EMBL”.
  • More plugins to be installed will be announced later (using the update sites function, like explained above).

Schedule

The schedule below may change depending on the progress, but the order of topics will mostly be kept as it is listed.

mainpages/courses/202001stuttgart.txt · Last modified: 2019/12/09 13:32 by kota