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EMBL BioImage Data Analysis

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Timeline of @cmci_

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RT @BoSoxBioBeth: 2 days left to submit an abstract proposal! We want all your best ideas on image analysis!
About 7 hours, 15 mins ago by: Kota Miura (@cmci_)

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RT @ManuelTHERY: Here we are. The combination of biochemically controled differentiation of iPS cells with microprinting to direct cell sel…
About 7 hours, 15 mins ago by: Kota Miura (@cmci_)

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RT @haesleinhuepf: "Do you also spend a substantial amount of your time waiting for automated image analysis to finish? [...] And, then, th…
About 18 hours, 42 mins ago by: Kota Miura (@cmci_)

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RT @ALM_i3S: Do you want to extract quantitative data from images and automate this process by learning ImageJ Macro Language? Apply to t…
About 1 day, 13 hours ago by: Kota Miura (@cmci_)

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RT @martinjones78: Very interesting #BioImageAnalysis PhD position! https://t.co/85QLBKiANx
About 1 day, 13 hours ago by: Kota Miura (@cmci_)

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RT @jobRxiv: #ScienceJobs: Image Analyst / Python programmer Francis Crick Institute (@TheCrick), London, UK https://t.co/T7cDhv9PX0 #P…
About 1 day, 13 hours ago by: Kota Miura (@cmci_)
mainpages:courses:macrocourse_preparation

Preparation before Coming to the Macro Course

Before you come to the course please:

  1. Install the newest version Fiji.
  2. Download textbook.
  3. If you have problem, call Kota (ex 8404).

Details:

1. Installation of Fiji.

Fiji is a plugin-bundled distribution of ImageJ. We use this because scripting editor function is excellent.
If you already have Fiji in your machine, just do the step 2.

INSTRUCTION


step 1. Download and install Fiji

Depending on the OS of your laptop, Consult either Windows, MacOSX or Linux page.

step 2. Upgrading
Start Fiji (described in above links). If your Fiji is not in the latest condition, Fiji automatically asks you to update the program. If you see that dialog, just accept. After updating is finished, close Fiji once, restart.

Now, Do [Help → Update Fiji…]. This may invoke another round of updating. Repeat this process until everything is up-to-date.

Lastly, check if the core ImageJ file is updated. [Help > Update ImageJ]. If you see “You are running v1.47d”, then your imageJ is the latest stable version so you could cancel. Otherwise, you should click “OK”.

2. Downloading course textbook

Textbook PDF could be downloaded from here. Right click (win) or control-click (mac) the image and save the file in your local disk.

For those who are more comfortable with printed textbook, please print it by yourself.

Misc

Please bring down power extension cable (for your laptop) for the course! Those of you with PC working without external supply for more than 2hours will be ok without. Since each of you use laptop full time during the course, its always that the power supply becomes problem. Bring down extension cable with multiple sockets if you could find it in your lab.

mainpages/courses/macrocourse_preparation.txt · Last modified: 2016/05/24 05:46 (external edit)