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EMBL BioImage Data Analysis

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cmci_ avatar

RT @florianjug: If you missed the webinar but are interested to have a look, a recording is now available: https://t.co/qVuhexTz3c Thanks a…
About 5 days, 21 hours ago by: Kota Miura (@cmci_)

cmci_ avatar

RT @SuperResoluSian: We've collated all the links from our @NEUBIAS_COST webinar on SMLM analysis into a post!⬇️ From here you can navigate…
About 1 week, 2 days ago by: Kota Miura (@cmci_)

cmci_ avatar

@jennyostrop crappy-code does not mean crappy science, and it is wrong not to have that "methods" included in that science.
About 1 week, 4 days ago by: Kota Miura (@cmci_)

cmci_ avatar

@florianjug @PS_cryoEM @jug_lab @FijiSc @mpicbg @csbdresden @humantechnopole @NEUBIAS_COST @f_levet I asked the sch… https://t.co/dJmcKq3B3t
About 1 week, 4 days ago by: Kota Miura (@cmci_)

cmci_ avatar

RT @florianjug: Today at 15:30 CEST we are proud to present a bunch of useful tools! #CSBDeep #CARE #N2V #StructN2V #DenoiSeg @jug_lab @Fij
About 1 week, 4 days ago by: Kota Miura (@cmci_)

cmci_ avatar

guys, here is the major upgrade of https://t.co/3DcWkN9peA ! https://t.co/V5COJZnkxp #neubias thanks to… https://t.co/1nD694aRWP
About 1 week, 5 days ago by: Kota Miura (@cmci_)
mainpages:linksvideo

Video Links

ImageJ Tutorials

ImageJ installation in Windows (2 min 30 sec)

Tutorial 01 Installing and Basics of ImageJ (46 min)

ImageJ tutorial (71 min)

Optimizing epifluorescence images (7min 40sec)

Particle Counting (7 min)

  1. Showing how to use [Analyze > Analyze Prticles…]

js9ECPuoOwA?.swf

Cell Area Measurement

- Segment cells using automatic thresholding, select cells using “magic wand” tool, store ROIs in roi manager.

WxTu2fn7QxY?.swf

Measure Intensity Changes over Time

  1. This tutorial uses MBF package so the menu structure is different from the bare ImageJ. You could do the same with legacy ImageJ by [Image > Stacks > Plot Z-axis Profile].

Gv7sJ7L2rRY?.swf

Automatic Nucleus Counting (ITCN Plugin)

Track and analyze Brownian Motions (MTrack2 plugin)

  1. Uses plugin “MTrack2” by Nico, and Excel to analyze tracks.

MDIVDAIkdME?.swf

Visualizing 3D (3Dviewer plugin)

Videos showing how to use 3D viewer, a plugin written by Benjamin Schmid. If you install Fiji, this plugin comes along with the installation.

  1. part 1

cD3Hc3NYkaU?.swf

  1. part 2

GqG_RcK3kYg?.swf

mainpages/linksvideo.txt · Last modified: 2016/05/24 05:46 (external edit)