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EMBL BioImage Data Analysis

EuBIAS

NEUBIAS

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Timeline of @cmci_

cmci_ avatar

RT @martinjones78: Save the date! October 20th, @TheCrick Bioimage Analysis Symposium, registration opening in April #CBIAS https://t.co/6H
About 19 hours, 55 mins ago by: Kota Miura (@cmci_)

cmci_ avatar

A new data set in the NEUBAIS-@zenodo_org collection, contributed by @volker_b @NEUBIAS_COST https://t.co/FLx3q2hqM6
About 1 day ago by: Kota Miura (@cmci_)

cmci_ avatar

RT @EuroBioImaging: Last chance to present your bioimaging analysis work at 4th NEUBIAS conference 👇 https://t.co/D4jfEVfWGo
About 4 days, 2 hours ago by: Kota Miura (@cmci_)

cmci_ avatar

RT @f_levet: You have until next monday to submit an abstract to the @NEUBIAS_COST Symposium. It's your last chance ! Go go go !
About 4 days, 3 hours ago by: Kota Miura (@cmci_)

cmci_ avatar

Bioimage Analysis Lunch Heidelberg, Jan 2020 https://t.co/6FcCNzu1QJ
About 4 days, 3 hours ago by: Kota Miura (@cmci_)

cmci_ avatar

RT @Datascience__: DL@MBL: Deep Learning for Microscopy Image Analysis https://t.co/DT25zxxaRn #DeepLearning
About 5 days, 2 hours ago by: Kota Miura (@cmci_)
mainpages:linksvideo

Video Links

ImageJ Tutorials

ImageJ installation in Windows (2 min 30 sec)

Tutorial 01 Installing and Basics of ImageJ (46 min)

ImageJ tutorial (71 min)

Optimizing epifluorescence images (7min 40sec)

Particle Counting (7 min)

  1. Showing how to use [Analyze > Analyze Prticles…]

js9ECPuoOwA?.swf

Cell Area Measurement

- Segment cells using automatic thresholding, select cells using “magic wand” tool, store ROIs in roi manager.

WxTu2fn7QxY?.swf

Measure Intensity Changes over Time

  1. This tutorial uses MBF package so the menu structure is different from the bare ImageJ. You could do the same with legacy ImageJ by [Image > Stacks > Plot Z-axis Profile].

Gv7sJ7L2rRY?.swf

Automatic Nucleus Counting (ITCN Plugin)

Track and analyze Brownian Motions (MTrack2 plugin)

  1. Uses plugin “MTrack2” by Nico, and Excel to analyze tracks.

MDIVDAIkdME?.swf

Visualizing 3D (3Dviewer plugin)

Videos showing how to use 3D viewer, a plugin written by Benjamin Schmid. If you install Fiji, this plugin comes along with the installation.

  1. part 1

cD3Hc3NYkaU?.swf

  1. part 2

GqG_RcK3kYg?.swf

mainpages/linksvideo.txt · Last modified: 2016/05/24 05:46 (external edit)