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EMBL BioImage Data Analysis

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Timeline of @cmci_

cmci_ avatar

RT @dgaboriau: Actually, a must watch not only for @Icy_BioImaging users, but for everyone doing image analysis 😊 #bioimageanalysis #imagi…
About 1 hour, 29 mins ago by: Kota Miura (@cmci_)

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Socially distanced 2-days workshop https://t.co/FM2UjofqTr
About 15 hours, 16 mins ago by: Kota Miura (@cmci_)

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RT @Fr_BioImaging: #onlinetraining on "Image Processing for Correlated and Multimodal Imaging Techniques" organized by @COMULIS_COST Regist…
About 1 day, 6 hours ago by: Kota Miura (@cmci_)

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RT @jytinevez: New preprinton combining #TrackMate and #StarDist in the #ZeroCostDL4Mic framework. Work led by Guillaume and excellent col…
About 1 day, 6 hours ago by: Kota Miura (@cmci_)

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RT @LauLauThom: Just updated the Roi 1-click tools with a cool feature 🥳 Keep the left-click maintained to preview the roi and adjust its p…
About 3 days, 13 hours ago by: Kota Miura (@cmci_)

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@KuglerElisabeth @martinjones78 @dgaboriau @WilsonAdams_ @focalplane_jcs @AcademicChatter @NEUBIAS_COSThttps://t.co/V7G5Ibfe28
About 4 days, 1 hour ago by: Kota Miura (@cmci_)
mainpages:linksvideo

Video Links

ImageJ Tutorials

ImageJ installation in Windows (2 min 30 sec)

Tutorial 01 Installing and Basics of ImageJ (46 min)

ImageJ tutorial (71 min)

Optimizing epifluorescence images (7min 40sec)

Particle Counting (7 min)

  1. Showing how to use [Analyze > Analyze Prticles…]

js9ECPuoOwA?.swf

Cell Area Measurement

- Segment cells using automatic thresholding, select cells using “magic wand” tool, store ROIs in roi manager.

WxTu2fn7QxY?.swf

Measure Intensity Changes over Time

  1. This tutorial uses MBF package so the menu structure is different from the bare ImageJ. You could do the same with legacy ImageJ by [Image > Stacks > Plot Z-axis Profile].

Gv7sJ7L2rRY?.swf

Automatic Nucleus Counting (ITCN Plugin)

Track and analyze Brownian Motions (MTrack2 plugin)

  1. Uses plugin “MTrack2” by Nico, and Excel to analyze tracks.

MDIVDAIkdME?.swf

Visualizing 3D (3Dviewer plugin)

Videos showing how to use 3D viewer, a plugin written by Benjamin Schmid. If you install Fiji, this plugin comes along with the installation.

  1. part 1

cD3Hc3NYkaU?.swf

  1. part 2

GqG_RcK3kYg?.swf

mainpages/linksvideo.txt · Last modified: 2016/05/24 12:46 (external edit)