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EMBL BioImage Data Analysis

EuBIAS

NEUBIAS

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Timeline of @cmci_

cmci_ avatar

RT @cytomine_uliege: Our @NEUBIAS_COST BIAFLOWS web tool is already making some lovely noise in the community ;-) Might be of interest for…
About 18 hours, 47 mins ago by: Kota Miura (@cmci_)

cmci_ avatar

RT @dgaboriau: #BioImageAnalysis Training Schools by @NEUBIAS_COST in Bordeaux Highly recommended if you want world-class teaching ! #NEU…
About 5 days, 13 hours ago by: Kota Miura (@cmci_)

cmci_ avatar

RT @NEUBIAS_COST: BIAFLOWS: A collaborative framework to benchmark bioimage analysis workflows https://t.co/I23P1BaNUd
About 5 days, 13 hours ago by: Kota Miura (@cmci_)

cmci_ avatar

RT @SimonFlyvbjerg: Nice collection of papers from 2019 -- Focus on Deep Learning in Microscopy: https://t.co/CfUyLdEiDw #BioImageAnalysi…
About 5 days, 16 hours ago by: Kota Miura (@cmci_)

cmci_ avatar

RT @mariana_deniz: Here is our @preLights highlight on BIAFLOWS, an exciting tool for sharing, deploying, and comparing bioimage analysis w…
About 1 week, 1 day ago by: Kota Miura (@cmci_)

cmci_ avatar

RT @NEUBIAS_COST: NEUBIAS Training Schools TS14 & TS15 – Bordeaux, France, Feb 29 - March 3, 2020 | Applications Now Open - https://t.co/hX
About 1 week, 2 days ago by: Kota Miura (@cmci_)
mainpages:linksvideo

Video Links

ImageJ Tutorials

ImageJ installation in Windows (2 min 30 sec)

Tutorial 01 Installing and Basics of ImageJ (46 min)

ImageJ tutorial (71 min)

Optimizing epifluorescence images (7min 40sec)

Particle Counting (7 min)

  1. Showing how to use [Analyze > Analyze Prticles…]

js9ECPuoOwA?.swf

Cell Area Measurement

- Segment cells using automatic thresholding, select cells using “magic wand” tool, store ROIs in roi manager.

WxTu2fn7QxY?.swf

Measure Intensity Changes over Time

  1. This tutorial uses MBF package so the menu structure is different from the bare ImageJ. You could do the same with legacy ImageJ by [Image > Stacks > Plot Z-axis Profile].

Gv7sJ7L2rRY?.swf

Automatic Nucleus Counting (ITCN Plugin)

Track and analyze Brownian Motions (MTrack2 plugin)

  1. Uses plugin “MTrack2” by Nico, and Excel to analyze tracks.

MDIVDAIkdME?.swf

Visualizing 3D (3Dviewer plugin)

Videos showing how to use 3D viewer, a plugin written by Benjamin Schmid. If you install Fiji, this plugin comes along with the installation.

  1. part 1

cD3Hc3NYkaU?.swf

  1. part 2

GqG_RcK3kYg?.swf

mainpages/linksvideo.txt · Last modified: 2016/05/24 05:46 (external edit)