mainpages:seminar2014
Table of Contents
CMCI seminar 2.0
The CMCI Image Analysis Seminar aims at promoting interaction among image analysts in EMBL and the exchanges of information among them. To join, please send a mail to Kota (miura@embl.de).
For older seminars from 2006 to 2013, please refer to this page.
Rules
- All participants should give talks alternately.
- No participation as an observer, should be listed as a speaker.
- Two people will give 30 minutes takes each on Wednesday during 15:45 - 17:00.
- Every three weeks.
Topics
Four types of talk, choose one for your talk.
- “Look, I did a great image analysis job” seminar.
- “I'm doing badly on this image. Please help” seminar.
- “I don't know if my image analysis is good or bad. Please comment” seminar.
- “I have not much to say so I read a paper” seminar.
Organizers
- Luis Pedro Coelho
- Christoph Schiklenk
- Antonio Politi
- Kota Miura
Schedule
| Date | Talk Title | First Name | Last Name | unit | moderator |
|---|---|---|---|---|---|
| 6/18/2014 | kick-off / Evaluation Methods for Segmentation | Kota | Miura | EMBL Centres | |
| 6/18/2014 | A semi-automated image processing pipeline for measurement of chromosome loci distance over time | Christoph | Schiklenk | CBB | |
| 7/2/2014 | Analysis of the cell lineage of Platynereis brain | Pavel | Vopalensky | DB | |
| 7/2/2014 | Classification of images of mixed communities | Luis Pedro | Coelho | SCB | |
| 7/23/2014 | tentative title: How to determinine the molecular architecture of the exocyst complex by light microscopy | Andrea | Picco | CBB | |
| 7/23/2014 | TBA | Volker | Hilsenstein | Core Facility | |
| 9/3/2014 | Quantifying COPII coat turnover at ER-exit sites with automated FRAP | Aliaksandr | Halavatyi | CBB | |
| 9/3/2014 | Contraction waves at cell division - measuring cell shape changes | Johanna | Bischof | CBB | |
| 9/24/2014 | Chromosome tracking in starfish oocyte | Mariia | Burdyniuk | CBB | |
| 9/24/2014 | Towards an in silico model of the dividing human cell | Julius | Hossain | CBB | |
| 10/15/2014 | Dealing with SPIM data: multi-view registration and fusion methods | Balázs | Bálint | CBB | |
| 10/15/2014 | Quantification of cell shape dynamics and optogenetic activation efficiency to study a light-perturbed morphogenetic process | Joe | Barry | GB | |
| 11/12/2014 | Complex experiments made easy: how to automate your microscopy pipeline | Antonio | Politi | CBB | Christof Schiklenk |
| 11/12/2014 | Role of cytoskeleton in morphological changes of blood platelets. | Aastha | Mathur | CBB | Christof Schiklenk |
| 11/26/2014 | Unsupervised modelling of ""Mitotic Standard Time"" for automatic analysis of human mitotic protein spatio-temporal distribution dynamics during cell division" | Yin | Cai | CBB | Antonio Politi |
| 11/26/2014 | gitter: a robust and accurate method for quantification of colony sizes from plate images | Omar | Wagih | EBI | Antonio Politi |
| 12/17/2014 | Considerations on Quantitative Intensity Measurements | Christian | Tischer | Core Facility | Kota Miura |
| 12/17/2014 | A Semi-Automatic Quantification method for observing the heterogeneity in re-replication patterns in fission yeast | Nickolaos | Giakoumakis | visitor | Kota Miura |
| 1/14/2015 | How to measure distances between centrioles and membranes? | Joana | Pinto | CBB | Luis Pedro Coelho |
| 1/14/2015 | Bioimage Information Index: Why and How | Kota | Miura | CBB | Luis Pedro Coelho |
| 2/11/2015 | Techniques of the velocimetry | Ritsuya | Niwayama | DB | Christof Schiklenk |
| 2/11/2015 | 2D tracking routine for following densely spaced objects the tracking and the segmentation in 3D | Wani | Xiang | CBB | Christof Schiklenk |
| 2/25/2015 | TBA | Nike | Walther | CBB | Antonio Politi |
| 2/25/2015 | From Matlab and ImageJ to Python - How and why I made the transition and how good or bad is python for image processing (discussion | Petr | Strnad | CBB | Antonio Politi |
| 3/18/2015 | Individuals in the collective: towards the quantification of single cell shape changes during morphogenetic movement coordination | Emiliano | Izquierdo | DB | Kota Miura |
| 3/18/2015 | 3D superresolution microscopy by supercritical angle detection | Joran | Deschamps | CBB | Kota Miura |
| 4/15/2015 | FluoQ – an ImageJ macro for rapid analysis of multiparameter fluorescence imaging data | Frank | Stein | CBB | Luis Pedro Coelho |
| 4/15/2015 | Grid pattern detection during a CLEM workflow (and little bit of Knime). | José Miguel | Serra Lleti | CBB | Luis Pedro Coelho |
| 4/29/2015 | Sorting and Imaging of Fluorescent Cells Encapsulated in Microfluidics Droplets | Hongxing | Hu | GB | Christof Schiklenk |
| 4/29/2015 | Population Image Analysis | Leopold | Parts | GB | Christof Schiklenk |
| 5/20/2015 | Iris: expanding the palette of microbial phenotypic readouts | George | Kritikos | GB | Aliaksandr Halavatyi |
| 5/27/2015 | Single-cell resolution atlas of gene expression for comparative Evo-Devo a zebrafish light sheet microscope. | Hernando Martinez | Vergara | DB | Aliaksandr Halavatyi |
| 6/10/2015 | Image analysis for zSPIM | Nils | Norin | CBB | Kota Miura | |
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mainpages/seminar2014.txt · Last modified: 2016/05/24 12:46 by 127.0.0.1