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EMBL BioImage Data Analysis

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RT @martinjones78: Save the date! October 20th, @TheCrick Bioimage Analysis Symposium, registration opening in April #CBIAS https://t.co/6H
About 21 hours, 29 mins ago by: Kota Miura (@cmci_)

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A new data set in the NEUBAIS-@zenodo_org collection, contributed by @volker_b @NEUBIAS_COST https://t.co/FLx3q2hqM6
About 1 day, 2 hours ago by: Kota Miura (@cmci_)

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RT @EuroBioImaging: Last chance to present your bioimaging analysis work at 4th NEUBIAS conference 👇 https://t.co/D4jfEVfWGo
About 4 days, 3 hours ago by: Kota Miura (@cmci_)

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RT @f_levet: You have until next monday to submit an abstract to the @NEUBIAS_COST Symposium. It's your last chance ! Go go go !
About 4 days, 5 hours ago by: Kota Miura (@cmci_)

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Bioimage Analysis Lunch Heidelberg, Jan 2020 https://t.co/6FcCNzu1QJ
About 4 days, 5 hours ago by: Kota Miura (@cmci_)

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RT @Datascience__: DL@MBL: Deep Learning for Microscopy Image Analysis https://t.co/DT25zxxaRn #DeepLearning
About 5 days, 3 hours ago by: Kota Miura (@cmci_)
shared:bias2013:assignments

Assignments

module 1 and 2

1. Quantum dot counting (planned, but omitted)

sample image: quantumdots.tif

design a protocol for segmenting quantum dot and write a macro that counts the number of quantum dots in the image.

2. Modify dot movement macro as you like.

(Brownian, Cycloid, Sinusoidal …)

Save your macro in the data server. Please do not forget to include your names in the macro file name.

Answers

module 4

Relative Movement

Go to section 4.4.7 and do the exercise 4.4.7-1.

PIV based anaysis (omitted)

Try install and using the following plugin: https://sites.google.com/site/qingzongtseng/piv

Get a vector field data (you need only two frames for this), save the results as a csv file and then analyze the directioanlity in R.

shared/bias2013/assignments.txt · Last modified: 2017/06/06 20:12 by kota