User Tools

Site Tools


Sidebar

Top
Seminar
Courses -2016
Courses 2018-
Textbooks
Documents
Downloads (-2016)
Downloads (2016-)
Weblog
RSS aggregates
Discussions
Archives


EMBL BioImage Data Analysis

EuBIAS

NEUBIAS

—- Contact
CMCI Alumni
ALMF
EMBL Heidelberg
EMBL Intranet


Popularity Ranking


Timeline of @cmci_

cmci_ avatar

RT @PavelTomancak: Whoa!
About 1 day, 7 hours ago by: Kota Miura (@cmci_)

cmci_ avatar

wow... https://t.co/cxgvLCIXeB
About 3 days, 6 hours ago by: Kota Miura (@cmci_)

cmci_ avatar

@e_petsalaki @GallegoLab @marko_kaksonen @Biosdfp @taraskalab @AndrewPlested @giraldezT @PeyingFong @ScottKFergusonhttps://t.co/ePwUQfWOIg
About 1 week, 1 day ago by: Kota Miura (@cmci_)

cmci_ avatar

.. I think that was a wrong link, here we go: COvid19 RESPirator OpeN SourcE https://t.co/NRILmhK0V6 #COVID19
About 1 week, 1 day ago by: Kota Miura (@cmci_)

cmci_ avatar

@GallegoLab @marko_kaksonen @Biosdfp @taraskalab @AndrewPlested @giraldezT @PeyingFong @ScottKFerguson… https://t.co/i2ObWLyyuL
About 1 week, 1 day ago by: Kota Miura (@cmci_)

cmci_ avatar

RT @MascalchiP: Reminder for today, 3 pm (Paris/Berlin/Amsterdam time): Free Image Analysis Clinic session! 🔬❓ Ask questions about any im…
About 1 week, 1 day ago by: Kota Miura (@cmci_)
shared:bias2013:assignments

Assignments

module 1 and 2

1. Quantum dot counting (planned, but omitted)

sample image: quantumdots.tif

design a protocol for segmenting quantum dot and write a macro that counts the number of quantum dots in the image.

2. Modify dot movement macro as you like.

(Brownian, Cycloid, Sinusoidal …)

Save your macro in the data server. Please do not forget to include your names in the macro file name.

Answers

module 4

Relative Movement

Go to section 4.4.7 and do the exercise 4.4.7-1.

PIV based anaysis (omitted)

Try install and using the following plugin: https://sites.google.com/site/qingzongtseng/piv

Get a vector field data (you need only two frames for this), save the results as a csv file and then analyze the directioanlity in R.

shared/bias2013/assignments.txt · Last modified: 2017/06/06 20:12 by kota