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Centre for Molecular and Cellular Imaging
CMCI@EMBL drives image analysis / processing activity by power of human networking.
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[EMBL CMS]
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Reproducible image handling and analysis
We often hear retraction of papers with fake image data like gel images with hand-drawn bands and cleanups, but in addition to such elementary-level mistakes, there are image analyses used in papers that are scientifically questionable. With Simon, we tried to shed light on this overlooked problem and propose a solution.
NEUBIAS Training School Paper
Details of motivations, the design, and paedagogic concepts of NEUBIAS Bioimage Analysis schools, started in 2017, are now in a manuscript. I wrote the “Bioimage Analyst School” part, and am quite satisfied to have the written record of our struggle and achievements, that I did together with the bioimage analysis genius Jean-Yves Tinevez (The Pasteur Institute, Paris).
Bleach Correction Plugin Paper
The paper describing the Bleach Correction Plugin (for ImageJ) is now published.
https://f1000research.com/articles/9-1494
Please cite this paper if you are using this plugin!
Bioimage Data Analysis Workflow (2019) Springer
We now have a new book "Bioimage Data Analysis Workflow"published from Springer, topics of which are centered around bioimage analysis workflows. The book is open access - thanks to the support from COST Action.
NeuBIAS Started!
As of May 3rd 2016, supported by COST grant, NeuBIAS officially launched for creating a stronger and broader network among bioimage analysts: read "EuBIAS Manifesto (2013, DOI:10.5281/zenodo.18047)" for more details about our initial motivation. The official document stating our activities is here (PDF)
BIAS has been a small group, and EuBIAS has been a bit larger but now with NeuBIAS, it's big!