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EMBL BioImage Data Analysis

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Timeline of @cmci_

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RT @pablo_jack: Brilliant! Calcium signalling in Filopodia. In neurons this could be beautiful
About 13 hours, 30 mins ago by: Kota Miura (@cmci_)

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RT @KuglerElisabeth: As many projects are shifted to #wfh, would there be interest for a 1h workshop on how to use our #Fiji analysis workf…
About 13 hours, 31 mins ago by: Kota Miura (@cmci_)

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but... ukulele case? https://t.co/FH3jhJ2jwz
About 1 day, 10 hours ago by: Kota Miura (@cmci_)

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RT @PavelTomancak: 5 days left (Sun Oct 25th) to apply for a tutorial to teach about the inner workings of your #BioImageAnalysis software…
About 1 day, 10 hours ago by: Kota Miura (@cmci_)

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wow, a great compilation. Just one point: image data repository with added-values for data mining, and data reposit… https://t.co/yZof1px9p2
About 1 day, 16 hours ago by: Kota Miura (@cmci_)

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RT @teofilo_breno: @TheCrick Biolmage Analysis Symposium. @infabic. #CBIAS2020 #BioImageAnalysis #Microscopy https://t.co/AUpiOETYFP
About 2 days, 12 hours ago by: Kota Miura (@cmci_)
mainpages:courses:202009witten

Workshop: Basics of Bioimage Analysis using ImageJ

Instructor

Kota Miura (Ph.D., Bioimage Analyst)

email: kotapub@gmail.com
URL: http://wiki.cmci.info

Organizer

Wing-Kee Lee, B.Sc., Ph.D.
Assistant Professor
Institute for Physiology, Pathophysiology & Toxicology
Department of Medicine, Faculty of Health
University of Witten/Herdecke

Place and Time

Place: FEZ (großer Saal), Alfred-Herrhausen-Straße 50, 58455 Witten
Date & Time: September 24th (10:00-18:00) & 25th (9:00-17:00), 2020

Preparation

Slides will be provided to you after the workshop.

Please install Fiji and plugins in your machine. Instructions are written in the page below.

Schedule

Day 1: 24 September (Thu), 2020

Time Topic
10:00 - 11:00 Introduction
11:00 - 11:30 COFFEE BREAK
11:30 - 12:30 From Images to Numbers
12:30 - 13:30 LUNCH BREAK
13:30 - 15:30 From Numbers to Images
Multi-Dimensional Data
15:30 - 16:00 COFFEE BREAK
16:00 - 18:00 Region of Interest and Segmentation
Pre- & Post-processing for a better segmentation
How filters work, Usage of Filters

Day 2: 25 September (Fri), 2020

Time Topic
09:00 - 10:00 Measurements: Counting and Locating Dots
10:00 - 10:30 COFFEE BREAK
10:30 - 12:30 Measurements: Lengths
Measurements: Area
Measurements: Volume
12:30 - 13:30 LUNCH BREAK
13:30 - 15:00 Batch Processing
Measuring Intensity Changes
15:00 - 15:30 COFFEE BREAK
15:30 - 16:30 Measuring Position Changes: Tracking Manually
Measuring Position Changes: Tracking Automatically
16:30 - 17:00 Answering to questions posted before the workshop
mainpages/courses/202009witten.txt · Last modified: 2020/09/21 11:54 by kota