User Tools

Site Tools


Courses -2016
Courses 2018-
Downloads (-2016)
Downloads (2016-)
RSS aggregates

EMBL BioImage Data Analysis



—- Contact
CMCI Alumni
EMBL Heidelberg
EMBL Intranet

Popularity Ranking

Timeline of @cmci_

cmci_ avatar

RT @_pm_lab: Unbiased quantitative phenotypic #BioImageAnalysis of #3D #microscopy images in #HighContentScreening is a fundamental challen…
About 7 hours, 45 mins ago by: Kota Miura (@cmci_)

cmci_ avatar

RT @joachimgoedhart: Our recent preprint has several step-by-step guides that explain how timelapse imaging data can be processed and visua…
About 5 days, 7 hours ago by: Kota Miura (@cmci_)

cmci_ avatar

RT @PLOSCompBiol: 3D #BioImageAnalysis for #HighContentScreening should be easy. Using data driven voxel-based features & #MachineLearning…
About 6 days, 23 hours ago by: Kota Miura (@cmci_)

cmci_ avatar

RT @ArizonaImaging: ImageJ/FIJI ASU TEC Talk, Thursday March 18. Learn about techniques at the beginner and advanced in a two-part workshop…
About 6 days, 23 hours ago by: Kota Miura (@cmci_)

cmci_ avatar

RT @jan_eglinger: Batch processing, image and data analysis with visual workflows using #KNIME - join @stelfrich and myself this Thursday f…
About 1 week ago by: Kota Miura (@cmci_)

cmci_ avatar

RT @DrAnneCarpenter: Postdoc opening in Boston! Your expertise in machine learning, statistics and/or data science can be splendidly appli…
About 1 week, 2 days ago by: Kota Miura (@cmci_)

Workshop: Basics of Bioimage Analysis using ImageJ


Kota Miura (Ph.D., Bioimage Analyst)



Wing-Kee Lee, B.Sc., Ph.D.
Assistant Professor
Institute for Physiology, Pathophysiology & Toxicology
Department of Medicine, Faculty of Health
University of Witten/Herdecke

Place and Time

Place: FEZ (großer Saal), Alfred-Herrhausen-Straße 50, 58455 Witten
Date & Time: September 24th (10:00-18:00) & 25th (9:00-17:00), 2020


Slides will be provided to you after the workshop.

Please install Fiji and plugins in your machine. Instructions are written in the page below.


Day 1: 24 September (Thu), 2020

Time Topic
10:00 - 11:00 Introduction
11:00 - 11:30 COFFEE BREAK
11:30 - 12:30 From Images to Numbers
12:30 - 13:30 LUNCH BREAK
13:30 - 15:30 From Numbers to Images
Multi-Dimensional Data
15:30 - 16:00 COFFEE BREAK
16:00 - 18:00 Region of Interest and Segmentation
Pre- & Post-processing for a better segmentation
How filters work, Usage of Filters

Day 2: 25 September (Fri), 2020

Time Topic
09:00 - 10:00 Measurements: Counting and Locating Dots
10:00 - 10:30 COFFEE BREAK
10:30 - 12:30 Measurements: Lengths
Measurements: Area
Measurements: Volume
12:30 - 13:30 LUNCH BREAK
13:30 - 15:00 Batch Processing
Measuring Intensity Changes
15:00 - 15:30 COFFEE BREAK
15:30 - 16:30 Measuring Position Changes: Tracking Manually
Measuring Position Changes: Tracking Automatically
16:30 - 17:00 Answering to questions posted before the workshop
mainpages/courses/202009witten.txt · Last modified: 2020/09/21 11:54 by kota