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EMBL BioImage Data Analysis

EuBIAS

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Timeline of @cmci_

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RT @mmvpgs: Who is ready for one more #NeubiasAcademy webinar⏬⏬⏬ Introduction to #ImJoy: AI-powered image analysis on the web Save the da…
About 3 hours, 20 mins ago by: Kota Miura (@cmci_)

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Hiking https://t.co/SdpHARQOFw
About 5 hours, 9 mins ago by: Kota Miura (@cmci_)

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RT @mycroscopy: 🚨🚨New webinar alert by Neubias Academy @ home🚨🚨 #imageanalysis #bioimageanalysis #ImJoy https://t.co/eOeQG9T2q7
About 5 hours, 33 mins ago by: Kota Miura (@cmci_)

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RT @biorxiv_bioinfo: NODeJ: an ImageJ plugin for 3D segmentation of nuclear objects https://t.co/JYC80fwD7y biorxiv_bioinfo">#biorxiv_bioinfo
About 5 hours, 33 mins ago by: Kota Miura (@cmci_)

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RT @KmitaMarie: NODeJ: an ImageJ plugin for 3D segmentation of nuclear objects https://t.co/12oqeCWLp9
About 5 hours, 34 mins ago by: Kota Miura (@cmci_)

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RT @quantumjot: Excited to share our new paper using explainable #AI to learn models of complex cell behavior -- including cell competition…
About 2 days ago by: Kota Miura (@cmci_)
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This is an old revision of the document!


Centre for Molecular and Cellular Imaging

CMCI@EMBL drives image analysis / processing activity by power of human networking.
Please feel free to comment on any page.
[EMBL CMS]



N E W S

NEUBIAS Training School Paper

Details of motivations, the design, and paedagogic concepts of NEUBIAS Bioimage Analysis schools, started in 2017, are now in a manuscript. I wrote the “Bioimage Analyst School” part, and am quite satisfied to have the written record of our struggle and achievements, that I did together with the bioimage analysis genius Jean-Yves Tinevez (The Pasteur Institute, Paris).

F1000R NEUBIAS Gateway: Highlights from the 2016-2020 NEUBIAS training schools for Bioimage Analysts: a success story and key asset for analysts and life scientists

Bleach Correction Plugin Paper

The paper describing the Bleach Correction Plugin (for ImageJ) is now published.

https://f1000research.com/articles/9-1494

Please cite this paper if you are using this plugin!

Bioimage Data Analysis Workflow (2019) Springer

https://link.springer.com/book/10.1007/978-3-030-22386-1 We now have a new book "Bioimage Data Analysis Workflow"published from Springer, topics of which are centered around bioimage analysis workflows. The book is open access - thanks to the support from COST Action.

NeuBIAS Started!

As of May 3rd 2016, supported by COST grant, NeuBIAS officially launched for creating a stronger and broader network among bioimage analysts: read "EuBIAS Manifesto (2013, DOI:10.5281/zenodo.18047)" for more details about our initial motivation. The official document stating our activities is here (PDF)

BIAS has been a small group, and EuBIAS has been a bit larger but now with NeuBIAS, it's big!

BIAS 2016

EMBL Master Course for Bioimage Data Analysis (BIAS2016): Registration is now open, deadline on April 15th.

Official Website: http://www.embl.de/bias2016

Course Wiki: BIAS2016 wiki

Published: Bioimage Data Analysis

A new book is now online: “Bioimage Data Analysis”. The instructors of EMBL Bioimage Data Analysis coauthored 10 chapters on practical techniques for analyzing image data in biology. E-books are downloadable free of charge from the following link.

Bioimage Data Analysis (2016), Wiley-VCH

For sample image data and codes, please download from the following link:

Bioimage Data Analysis: Materials

Triweekly CMCI image analysis seminar launched

The CMCI seminar has been either spontaneous or took a form of mini-symposium, but now in a new format.

Every three weeks, seminar member gathers and two of them present image analysis problems / solutions or reads a paper. For more details and the schedule, see this page.

BIAS 2014 wiki page

The 2nd “EMBL Master course on BioImage Data Analysis” will be in May. I , Sebastien Tosi (Barcelona) and Perrine Paul-Gilloteaux will be organizing the course. Here is the wiki page for this year.

http://cmci.embl.de/shared/bias2014

I added biography of invited speakers, so please check if you are interested! By the way, we abbreviate the course title as “BIAS2014”.

EuBIAS 2013, Successful!

 EuBIAS 2013, Barcelona The European Bioimage Analsis Symposium (EuBIAS) 2013 ended successfully! The meeting was with many active discussions, the course impressed students, the taggathon (we invented this event) generated a new type of bioimage analysis tool aggregator Biii.info. Great developers, great analysts, great users! Community, community, community!

Nature Physics Sept. 2013 Cover Page

http://www.nature.com/nphys/journal/v9/n9/full/nphys2715.html

The ImageJ plugin "Temporal-Color Code" was used for the analysis of the contraction of actomyosin gel and now in the cover page of Nature Physics, September 2013 issue. D. L. Taylor's “Solation-Contraction Coupling” hypothesis now on the move.

http://www.nature.com/nphys/journal/v9/n9/full/nphys2715.html

Thanks to José Alvarado for his kind acknowledgement and a big applause for his successful publication!

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