CMCI weblog
Reproducible image handling and analysis
We often hear retraction of papers with fake image data like gel images with hand-drawn bands and cleanups, but in addition to such elementary-level mistakes, there are image analyses used in papers that are scientifically questionable. With Simon, we tried to shed light on this overlooked problem and propose a solution.
NEUBIAS Training School Paper
Details of motivations, the design, and paedagogic concepts of NEUBIAS Bioimage Analysis schools, started in 2017, are now in a manuscript. I wrote the “Bioimage Analyst School” part, and am quite satisfied to have the written record of our struggle and achievements, that I did together with the bioimage analysis genius Jean-Yves Tinevez (The Pasteur Institute, Paris).
Bleach Correction Plugin Paper
The paper describing the Bleach Correction Plugin (for ImageJ) is now published.
https://f1000research.com/articles/9-1494
Please cite this paper if you are using this plugin!
Bioimage Data Analysis Workflow (2019) Springer
We now have a new book "Bioimage Data Analysis Workflow"published from Springer, topics of which are centered around bioimage analysis workflows. The book is open access - thanks to the support from COST Action.
Server moved
The web server hosting this wiki has moved from EMBL to InMotion. The move was rather straight forward, but as biii.info is in the subdomain, htaccess file was tweaked around to enable biii.info to stay as it is while moving only the wiki to be redirected from cmci.embl.de to cmci.info.
Anycase, InMotion seems to be fast enough for rendering (even though it's in US).