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Package Hierarchies:
mcib_plugins
,
mcib_plugins.analysis
,
mcib_plugins.Filter3D
,
mcib_plugins.segmentation
,
mcib_plugins.TEST
,
mcib_plugins.tools
,
mcib3d.align
,
mcib3d.Classification
,
mcib3d.ext
,
mcib3d.geom
,
mcib3d.geom.deformation3d
,
mcib3d.geom.interactions
,
mcib3d.geom2
,
mcib3d.geom2.measurements
,
mcib3d.geom2.measurementsPopulation
,
mcib3d.geom2.tracking
,
mcib3d.image3d
,
mcib3d.image3d.comparator
,
mcib3d.image3d.distanceMap3d
,
mcib3d.image3d.IterativeThresholding
,
mcib3d.image3d.IterativeThresholding.criteria
,
mcib3d.image3d.IterativeThresholding2
,
mcib3d.image3d.IterativeThresholding2.criteria
,
mcib3d.image3d.legacy
,
mcib3d.image3d.processing
,
mcib3d.image3d.regionGrowing
,
mcib3d.image3d.segment
,
mcib3d.Jama
,
mcib3d.Jama.test
,
mcib3d.Jama.util
,
mcib3d.spatial.analysis
,
mcib3d.spatial.descriptors
,
mcib3d.spatial.sampler
,
mcib3d.tracking_dev
,
mcib3d.utils
,
mcib3d.utils.Logger
Class Hierarchy
java.lang.Object
mcib_plugins.
About
mcib3d.utils.Logger.
AbstractLog
mcib3d.utils.Logger.
IJLog
mcib3d.utils.Logger.
IJStatus
mcib3d.utils.Logger.
NoLog
mcib3d.utils.Logger.
TextLog
javax.swing.table.AbstractTableModel (implements java.io.Serializable, javax.swing.table.TableModel)
mcib_plugins.tools.
ResultsTableModel
mcib3d.align.
Align2D
mcib3d.align.
Align3D
mcib3d.image3d.regionGrowing.
AllRegionsAssociation
mcib3d.image3d.regionGrowing.
Cluster
mcib3d.utils.
ArrayUtil
mcib3d.utils.
HistogramUtil
mcib3d.geom2.tracking.
Association
mcib3d.tracking_dev.
Association
mcib_plugins.
Association_
mcib3d.geom2.tracking.
Association_Track_Plugin
mcib3d.tracking_dev.
Association_Track_Plugin
mcib_plugins.
Association_Tracking
mcib3d.tracking_dev.
AssociationInt
mcib3d.geom2.tracking.
AssociationPair
mcib3d.tracking_dev.
AssociationPairInt
mcib3d.tracking_dev.
AssociationPairOld
mcib3d.image3d.regionGrowing.
AssociationRegion
mcib3d.Classification.
Attributes
mcib3d.image3d.IterativeThresholding2.criteria.
BestCriteriaMax
(implements mcib3d.image3d.IterativeThresholding2.criteria.
BestCriterion
)
mcib3d.image3d.IterativeThresholding.criteria.
BestCriteriaMax
(implements mcib3d.image3d.IterativeThresholding.criteria.
BestCriterion
)
mcib3d.image3d.IterativeThresholding2.criteria.
BestCriteriaMin
(implements mcib3d.image3d.IterativeThresholding2.criteria.
BestCriterion
)
mcib3d.image3d.IterativeThresholding.criteria.
BestCriteriaMin
(implements mcib3d.image3d.IterativeThresholding.criteria.
BestCriterion
)
mcib3d.image3d.IterativeThresholding2.criteria.
BestCriteriaStable
(implements mcib3d.image3d.IterativeThresholding2.criteria.
BestCriterion
)
mcib3d.image3d.IterativeThresholding.criteria.
BestCriteriaStable
(implements mcib3d.image3d.IterativeThresholding.criteria.
BestCriterion
)
mcib_plugins.
Binary_Close
mcib_plugins.
Binary_Interpolator
mcib_plugins.
BinaryInterpolator
mcib3d.image3d.processing.
BinaryMorpho
mcib3d.image3d.processing.
BinaryMultiLabel
mcib3d.utils.
BioFormatsReader
mcib3d.geom2.
BoundingBox
mcib_plugins.
Canny_Symmetry
mcib3d.image3d.processing.
CannyDeriche1D
mcib3d.image3d.processing.
CannyEdge3D
mcib3d.utils.
CDFTools
mcib3d.utils.
CheckInstall
mcib3d.Jama.
CholeskyDecomposition
(implements java.io.Serializable)
mcib3d.utils.
Chrono
mcib3d.Classification.
Classifier
mcib3d.image3d.distanceMap3d.
CleanUpLocalThickness
mcib3d.image3d.legacy.
ColorImage3D
mcib3d.geom.
ComparatorBorderDistance
(implements java.util.Comparator<T>)
mcib3d.image3d.comparator.
ComparatorByte
(implements java.util.Comparator<T>)
mcib3d.image3d.comparator.
ComparatorFloat
(implements java.util.Comparator<T>)
mcib3d.image3d.comparator.
ComparatorInvByte
(implements java.util.Comparator<T>)
mcib3d.image3d.comparator.
ComparatorInvFloat
(implements java.util.Comparator<T>)
mcib3d.image3d.comparator.
ComparatorInvShort
(implements java.util.Comparator<T>)
mcib3d.image3d.IterativeThresholding2.
ComparatorObjectTrack
(implements java.util.Comparator<T>)
mcib3d.image3d.IterativeThresholding.
ComparatorObjectTrack
(implements java.util.Comparator<T>)
mcib3d.image3d.comparator.
ComparatorShort
(implements java.util.Comparator<T>)
mcib3d.geom.
ComparatorVoxel
(implements java.util.Comparator<T>)
mcib3d.geom.
ComparatorVoxelInt
(implements java.util.Comparator<T>)
java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
java.awt.Container
java.awt.Window (implements javax.accessibility.Accessible)
java.awt.Frame (implements java.awt.MenuContainer)
javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
mcib3d.utils.
AboutMCIB
mcib3d.image3d.processing.
ManualSpot
mcib_plugins.tools.
ResultsFrame
(implements java.awt.event.ActionListener)
mcib_plugins.tools.
RoiManager3D_2
(implements java.awt.event.AdjustmentListener, java.awt.dnd.DropTargetListener, java.awt.event.MouseWheelListener, java.awt.event.WindowListener)
mcib_plugins.
Convex_Hull3D
mcib3d.image3d.
Coordinate3D
mcib3d.tracking_dev.
CostColoc2
(implements mcib3d.tracking_dev.
AssociationCost
)
mcib3d.geom2.tracking.
CostColocalisationDistanceBB
(implements mcib3d.geom2.tracking.
AssociationCost
)
mcib3d.tracking_dev.
CostColocalisationDistanceBB
(implements mcib3d.tracking_dev.
AssociationCost
)
mcib3d.geom2.tracking.
CostTouching
(implements mcib3d.geom2.tracking.
AssociationCost
)
mcib3d.tracking_dev.
CostTouching
(implements mcib3d.tracking_dev.
AssociationCost
)
mcib3d.image3d.IterativeThresholding.criteria.
CriterionClassification
(implements mcib3d.image3d.IterativeThresholding.criteria.
Criterion
)
mcib3d.image3d.IterativeThresholding2.criteria.
CriterionCompactness
(implements mcib3d.image3d.IterativeThresholding2.criteria.
Criterion
)
mcib3d.image3d.IterativeThresholding.criteria.
CriterionCompactness
(implements mcib3d.image3d.IterativeThresholding.criteria.
Criterion
)
mcib3d.image3d.IterativeThresholding2.criteria.
CriterionEdge
(implements mcib3d.image3d.IterativeThresholding2.criteria.
Criterion
)
mcib3d.image3d.IterativeThresholding.criteria.
CriterionEdge
(implements mcib3d.image3d.IterativeThresholding.criteria.
Criterion
)
mcib3d.image3d.IterativeThresholding2.criteria.
CriterionElongation
(implements mcib3d.image3d.IterativeThresholding2.criteria.
Criterion
)
mcib3d.image3d.IterativeThresholding.criteria.
CriterionElongation
(implements mcib3d.image3d.IterativeThresholding.criteria.
Criterion
)
mcib3d.image3d.IterativeThresholding2.criteria.
CriterionVolume
(implements mcib3d.image3d.IterativeThresholding2.criteria.
Criterion
)
mcib3d.image3d.IterativeThresholding.criteria.
CriterionVolume
(implements mcib3d.image3d.IterativeThresholding.criteria.
Criterion
)
mcib_plugins.
Crop3D_
mcib_plugins.
Crop3D_All
mcib3d.Classification.
Data
mcib3d.Classification.
DataSet
mcib3d.image3d.processing.
Density3D
mcib_plugins.
Density3D_
mcib3d.geom.deformation3d.
Deriche
mcib3d.image3d.distanceMap3d.
DistanceRidge
mcib_plugins.
Distances_
mcib_plugins.tools.
Draw_RoiSlices
mcib3d.image3d.distanceMap3d.
EDT
mcib3d.image3d.distanceMap3d.
EDT_1D
mcib_plugins.
EDT_3D
mcib3d.image3d.distanceMap3d.
EdtByte
mcib3d.image3d.distanceMap3d.
EdtByteInv
mcib3d.image3d.distanceMap3d.
EdtFloat
mcib3d.image3d.distanceMap3d.
EdtFloatInv
mcib3d.image3d.distanceMap3d.
EdtShort
mcib3d.image3d.distanceMap3d.
EdtShortInv
mcib3d.image3d.distanceMap3d.
EdtShortLabel
mcib3d.Jama.
EigenvalueDecomposition
(implements java.io.Serializable)
mcib_plugins.
Ellipsoids_3D
mcib_plugins.
EVF_Radial
mcib3d.utils.
exceptionPrinter
mcib3d.spatial.descriptors.
F_Function
(implements mcib3d.spatial.descriptors.
SpatialDescriptor
)
mcib_plugins.
Fast_filters3D
mcib3d.image3d.processing.
FastArithmetic3D
mcib3d.image3d.processing.
FastFilters3D
mcib3d.image3d.processing.
FastOperation3D
mcib_plugins.
Fill_Holes3D
mcib3d.image3d.processing.
FillHoles2D
mcib3d.image3d.processing.
FillHoles3D
mcib_plugins.Filter3D.
Filter3Ddefault
mcib_plugins.Filter3D.
Filter3Dmax
mcib_plugins.Filter3D.
Filter3DmaxLocal
mcib_plugins.Filter3D.
Filter3Dmean
mcib_plugins.Filter3D.
Filter3Dmin
mcib_plugins.Filter3D.
Filter3Ddefault.Voxel_value
mcib_plugins.
Filters3d_jni
mcib3d.image3d.processing.
Flood3D
mcib3d.spatial.descriptors.
G_Border
(implements mcib3d.spatial.descriptors.
SpatialDescriptor
)
mcib3d.spatial.descriptors.
G_Function
(implements mcib3d.spatial.descriptors.
SpatialDescriptor
)
mcib3d.geom.
GeomTransform3D
mcib_plugins.analysis.
GLCMTexture
mcib3d.geom.
Gradient
mcib3d.geom.
GradientPoint
mcib3d.spatial.descriptors.
H_Border
(implements mcib3d.spatial.descriptors.
SpatialDescriptor
)
mcib3d.spatial.descriptors.
H_Function
(implements mcib3d.spatial.descriptors.
SpatialDescriptor
)
mcib3d.image3d.IterativeThresholding2.
HistogramImage
mcib3d.geom2.tracking.
HungarianAlgorithm
mcib3d.tracking_dev.
HungarianAlgorithm
mcib_plugins.
Hysteresis_Thresholding
mcib3d.image3d.segment.
HysteresisSegment
mcib3d.image3d.legacy.
Image3D
mcib3d.image3d.legacy.
IntImage3D
mcib3d.image3d.legacy.
RealImage3D
mcib3d.image3d.legacy.
FHTImage3D
mcib3d.image3d.processing.
ImageColocalizer
mcib3d.image3d.processing.
ImageCropper
mcib3d.image3d.
ImageDimension
mcib3d.image3d.
ImageHandler
mcib3d.image3d.
ImageFloat
mcib3d.image3d.
ImageInt
mcib3d.image3d.
ImageByte
mcib3d.image3d.
BlankMask
mcib3d.image3d.
ImageShort
mcib3d.image3d.
ImageLabeller
mcib3d.image3d.
ImageLabeller.Spot3D
mcib3d.image3d.
ImageLabeller.Vox3D
mcib3d.image3d.
ImageLabeller2D
mcib3d.image3d.
ImageLabeller2D.Spot2D
mcib3d.image3d.
ImageLabeller2D.Vox2D
mcib3d.image3d.processing.
ImageMontager
mcib3d.image3d.
ImagePlus_Utils
mcib3d.image3d.processing.
ImageShuffler
mcib3d.image3d.
ImageStats
mcib3d.image3d.processing.
ImageThumbnailer
mcib3d.ext.
Imod
mcib3d.ext.
ImodConf
mcib3d.geom.
IntCoord3D
mcib3d.geom.interactions.
Interactions
mcib_plugins.
Interactions_
mcib3d.geom.interactions.
InteractionsComputeContours
(implements mcib3d.geom.interactions.
InteractionsCompute
)
mcib3d.geom.interactions.
InteractionsComputeDamLines
(implements mcib3d.geom.interactions.
InteractionsCompute
)
mcib3d.geom.interactions.
InteractionsComputeDilate
(implements mcib3d.geom.interactions.
InteractionsCompute
)
mcib3d.geom.interactions.
InteractionsComputeVoronoi
(implements mcib3d.geom.interactions.
InteractionsCompute
)
mcib3d.geom.interactions.
InteractionsList
mcib3d.geom.deformation3d.
IO
mcib3d.spatial.descriptors.
K_Function
(implements mcib3d.spatial.descriptors.
SpatialDescriptor
)
mcib3d.utils.
KDTreeC
mcib3d.utils.
KDTreeC.Item
mcib_plugins.Filter3D.
Kernel3D
mcib_plugins.
Line3D_
mcib3d.image3d.distanceMap3d.
LocalThickness
mcib3d.image3d.segment.
LocalThresholder
mcib3d.image3d.segment.
LocalThresholderConstant
mcib3d.image3d.segment.
LocalThresholderDiff
mcib3d.image3d.segment.
LocalThresholderGaussFit
mcib3d.image3d.segment.
LocalThresholderMean
mcib3d.Jama.
LUDecomposition
(implements java.io.Serializable)
mcib_plugins.tools.
Manager3DMeasurements
mcib_plugins.segmentation.
Manual_Spot
mcib3d.image3d.
MaskIterator
mcib3d.Jama.util.
Maths
mcib3d.Jama.
Matrix
(implements java.lang.Cloneable, java.io.Serializable)
mcib3d.image3d.processing.
MaximaFinder
mcib_plugins.
MaximaFinder3D_
mcib3d.geom2.measurements.
Measure2Colocalisation
mcib3d.geom2.measurements.
Measure2Distance
mcib3d.geom2.measurements.
MeasureAbstract
mcib3d.geom2.measurements.
MeasureCenterOfMass
mcib3d.geom2.measurements.
MeasureCentroid
mcib3d.geom2.measurements.
MeasureCompactness
mcib3d.geom2.measurements.
MeasureDistancesCenter
mcib3d.geom2.measurements.
MeasureEllipsoid
mcib3d.geom2.measurements.
MeasureFeret
mcib3d.geom2.measurements.
MeasureIntensity
mcib3d.geom2.measurements.
MeasureIntensityHist
mcib3d.geom2.measurements.
MeasureMoments
mcib3d.geom2.measurements.
MeasureNumbering
mcib3d.geom2.measurements.
MeasureSurface
mcib3d.geom2.measurements.
MeasureVolume
mcib3d.geom2.measurements.
MeasureObject
mcib3d.geom2.measurementsPopulation.
MeasurePopulationAbstract
mcib3d.geom2.measurementsPopulation.
MeasurePopulationClosestDistance
mcib3d.geom2.measurementsPopulation.
MeasurePopulationColocalisation
mcib3d.geom2.measurementsPopulation.
MeasurePopulationDistance
mcib_plugins.
Mereo_3D
mcib3d.geom.
MereoAnalysisOld
mcib3d.geom.
MereoObject3DOld
mcib3d.geom.deformation3d.
Mesh
mcib3d.geom.
MeshEditor
mcib3d.utils.
Message
mcib_plugins.tools.
Montager_
mcib_plugins.
Multi_Coloc
mcib_plugins.
Numbering_
mcib3d.geom.
Object3D
(implements java.lang.Comparable<T>)
mcib3d.geom.
Object3DLabel
mcib3d.geom.
Object3DSurface
mcib3d.geom.deformation3d.
DeformableMesh
mcib3d.geom.
Object3DVoxels
mcib3d.geom.
Object3DFuzzy
mcib3d.geom.
Object3DPoint
mcib3d.geom.
Object3D_IJUtils
mcib3d.geom2.
Object3DComputation
mcib3d.geom.
Object3DFactory
mcib3d.geom.
Object3DFactory.ObjectValueComparator
(implements java.util.Comparator<T>)
mcib3d.geom2.
Object3DInt
mcib3d.geom2.
Object3DIntLabelImage
mcib3d.geom2.
Object3DIntLoader
mcib3d.geom2.
Object3DIntSaver
mcib3d.geom2.
Object3DPlane
mcib_plugins.
ObjectCreator_
mcib3d.geom.
ObjectCreator3D
mcib3d.geom.
ObjectDistBB
mcib3d.geom2.
Objects3DIntPopulation
mcib3d.geom2.
Objects3DIntPopulationComputation
mcib3d.geom.
Objects3DPopulation
mcib3d.geom.
Objects3DPopulationAnalysis
mcib3d.geom.
Objects3DPopulationColocalisation
mcib3d.geom.
Objects3DPopulationInteractions
mcib3d.geom.
ObjectsPopulationDistances
mcib3d.image3d.IterativeThresholding2.
ObjectTrack
mcib3d.image3d.IterativeThresholding.
ObjectTrack
mcib3d.geom.
PairColocalisationOld
mcib3d.geom2.measurementsPopulation.
PairObjects3DInt
PlugInFrame
mcib_plugins.
ConnectionThresholding_
(implements java.awt.event.ActionListener, java.awt.event.AdjustmentListener, java.awt.event.ItemListener, java.lang.Runnable)
mcib3d.geom.
Point3D
mcib3d.geom.
Vector3D
mcib3d.geom.
Voxel3D
(implements java.lang.Comparable<T>)
mcib3d.geom.
Voxel3DComparable
mcib3d.geom.
Point3DInt
mcib3d.geom2.
VoxelInt
mcib3d.geom2.
VoxelIntComparable
mcib3d.Jama.
QRDecomposition
(implements java.io.Serializable)
mcib_plugins.
Radial_3D
mcib3d.geom.
RDAR
mcib_plugins.
RDAR_
mcib_plugins.
RemoveObjectsBorder_
mcib_plugins.tools.
RoiManager3D_Options
mcib_plugins.
SeedSpots_Plus
mcib_plugins.
Segment3D_
mcib3d.image3d.segment.
Segment3DImage
mcib3d.image3d.segment.
Segment3DNuclei
mcib3d.image3d.segment.
Segment3DSpots
mcib3d.image3d.segment.
Segment3DSpotsOld
mcib3d.image3d.segment.
SegNuclei
mcib_plugins.
SegNuclei_
mcib_plugins.
Shape3D_
mcib3d.utils.
Shell
mcib_plugins.
Shuffle_
mcib_plugins.
Simple_Dist_Analysis
mcib_plugins.
Simple_MeasureCentroid
mcib_plugins.
Simple_MeasureDistCentre
mcib_plugins.
Simple_MeasureEllipsoid
mcib_plugins.
Simple_MeasureFeret
mcib_plugins.
Simple_MeasureMesh
mcib_plugins.
Simple_MeasureShape
mcib_plugins.
Simple_MeasureStatistics
mcib_plugins.
Simple_MeasureSurface
mcib_plugins.
Simple_MeasureVolume
mcib_plugins.analysis.
SimpleMeasure
mcib3d.Jama.
SingularValueDecomposition
(implements java.io.Serializable)
mcib_plugins.analysis.
SpatialAnalysis
mcib3d.spatial.sampler.
SpatialRandom
(implements mcib3d.spatial.sampler.
SpatialModel
)
mcib3d.spatial.sampler.
SpatialRandomHardCore
(implements mcib3d.spatial.sampler.
SpatialModel
)
mcib3d.spatial.sampler.
SpatialShuffle
(implements mcib3d.spatial.sampler.
SpatialModel
)
mcib3d.spatial.analysis.
SpatialStatistics
mcib3d.image3d.segment.
SpotSegmenter
mcib3d.image3d.segment.
SpotSegmenterBlock
mcib3d.image3d.segment.
SpotSegmenterClassical
mcib3d.image3d.segment.
SpotSegmenterMax
mcib3d.utils.
StackFolderOpener
mcib_plugins.
Stats_Spat3D
mcib3d.image3d.processing.
SymmetryFilter
mcib3d.geom2.
TestGeom2
mcib3d.Jama.test.
TestMatrix
mcib3d.utils.
ThreadRunner
mcib3d.utils.
ThreadUtil
mcib_plugins.
Track_Threshold
mcib3d.geom2.tracking.
TrackingAssociation
mcib3d.tracking_dev.
TrackingAssociation
mcib3d.image3d.IterativeThresholding.
TrackThreshold
mcib3d.image3d.IterativeThresholding2.
TrackThreshold2
mcib_plugins.TEST.
TranslateCenterOfMass_
mcib3d.geom.deformation3d.
Triangle
mcib3d.geom.deformation3d.
Vertex
mcib3d.geom.
Viewer3D_Utils
mcib3d.image3d.distanceMap3d.
VoxEVF
(implements java.lang.Comparable<T>)
mcib_plugins.
Watershed_3D
mcib_plugins.
Watershed_Split3D
mcib_plugins.
Watershed_Voronoi3D
mcib3d.image3d.regionGrowing.
Watershed3D
mcib3d.image3d.regionGrowing.
Watershed3D_old
mcib3d.image3d.regionGrowing.
RegionGrowing
mcib3d.image3d.regionGrowing.
Watershed3DOld
mcib3d.image3d.regionGrowing.
Watershed3DVoronoi
mcib3d.ext.
Xmipp
mcib3d.ext.
XmippConf
Interface Hierarchy
mcib3d.geom2.tracking.
AssociationCost
mcib3d.tracking_dev.
AssociationCost
mcib3d.tracking_dev.
AssociationCostInt
mcib3d.image3d.IterativeThresholding2.criteria.
BestCriterion
mcib3d.image3d.IterativeThresholding.criteria.
BestCriterion
mcib3d.image3d.IterativeThresholding2.criteria.
Criterion
mcib3d.image3d.IterativeThresholding.criteria.
Criterion
mcib3d.geom.interactions.
InteractionsCompute
mcib3d.spatial.descriptors.
SpatialDescriptor
mcib3d.spatial.sampler.
SpatialModel
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